LOCUS       XM_017592203            4336 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus phospholipase A2, group IVE (Pla2g4e),
            transcript variant X4, mRNA.
ACCESSION   XM_017592203
VERSION     XM_017592203.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017592203.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4336
                     /gene="Pla2g4e"
                     /note="phospholipase A2, group IVE; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 31 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:296091"
                     /db_xref="RGD:1310595"
     CDS             140..2626
                     /gene="Pla2g4e"
                     /codon_start=1
                     /product="cytosolic phospholipase A2 epsilon isoform X4"
                     /protein_id="XP_017447692.1"
                     /db_xref="GeneID:296091"
                     /db_xref="RGD:1310595"
                     /translation="MLQRQMPAWVSHSLSDTCQAEDGRCSEEGSSPCHLLTVRIISMK
                     NVRQADILSQTDCFVTLWLPTASQKKLRTRTISNCPHPEWNESFTFQIQTRVKNVLEF
                     SICDEDTLTQSDHLLTVLYDLSKLCLRNKTHVKFPLNPEGMEELEVEFLLEENVSSSE
                     TLITNGVLVSRQVSCLEVHAESRRPRKRKKNKNLLVMVTDSFENTQCVQPCLEPCCPN
                     PACFHYPKYSQPQLYAEAPKSHWSYRLCCCEAQRNDTVCQPLDCLSDGQPMTLPLGEN
                     YELHMKSSPCSNTLDVRLGFSLCQEEVEFLQKRKVAVTKALNQVLQLEEGLHEHEVPM
                     IAIMATGGGTRSMVSLYGHLLGLQKLNLLDCSVYLTGLSGATWTMATLYSDPEWSSKD
                     LEPVVFEARRHVVKDKMPALYPDQLCKWQEELRQHSQEGYKTTFTDFWGKLVEYSLGD
                     KKNECKLSEQRAALCRGQNPLPIYLTINVKDDVSNQDFREWFEFSPYEVGMQKYGAFI
                     PTELFGSEFFMGRLMKRIPEPEMCYMLGLWSSIFSLNLLDAWNLSHTSEEFFYRWTRE
                     KLHDIEDDPLLPEIPRCDANPLETTVVIPATWLSNTFREILTHRPLVSEFHNFLYGLQ
                     LHTDYLQNKQFCMWKDTVLDTFPNQLTQFTKHLNLLDTAFFVNSSYAPLLRPERKVDL
                     IIHLNYCAGSQTKPLKQTCEYCTEQNIPFPNYSIQEDDKSLKECYVMENPQEPDAPIV
                     VYFPLINDTFQKYKAPGVERSPEELELGQLNIYGPKSPYATKELTYTEAAFDKLVKLS
                     EYNILNNKDKLIQAVRLAMEKKRMKSQCPS"
     polyA_site      4336
                     /gene="Pla2g4e"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttcaggtctc acccatagtt ccaaaatata tccatcctat ctatgggcca gaaaagccgg
       61 ttgttgagcc tcaggcaaga gcccagacag gaaactccca gtgtggattc aggcaagcca
      121 gagctggaga gccgccacga tgcttcagag gcagatgcct gcttgggttt cccactccct
      181 gtcagacaca tgccaagcag aagatggcag gtgctcggag gaggggtcgt ctccatgcca
      241 tctattgaca gtgaggatca ttagcatgaa aaatgttcgg caggctgata tattgagtca
      301 gacagattgc tttgtgaccc tctggctgcc tactgcctct cagaagaagc tgaggaccag
      361 aaccatctcc aactgcccac acccagagtg gaatgaaagc ttcacctttc agatccagac
      421 tcgagtaaag aatgttctag agttcagcat ctgtgatgaa gatacgctga cacaaagtga
      481 ccatctcttg acagtcctct atgacctctc caagctctgc cttcggaata aaacccacgt
      541 gaagttccca ctcaacccag agggcatgga agaactggaa gtggagttcc tgctcgaaga
      601 aaatgtctcc tcatcagaga ccctcatcac caatggcgtg ctggtgtctc gccaagtctc
      661 ttgcctggaa gttcatgcag aatccaggag gccaaggaag aggaagaaaa acaaaaacct
      721 tctggtgatg gtgacagact ccttcgagaa cacccagtgt gtccagccct gtctggagcc
      781 ctgctgcccc aatcctgcct gcttccacta ccccaaatac tcccagcccc agctttatgc
      841 agaggcacct aagagccact ggagctatag gctttgctgc tgtgaagcac aaaggaatga
      901 cacagtctgc cagcccctcg attgcctttc tgatggccag ccgatgaccc tgcctttggg
      961 agagaactat gagttacaca tgaagtcctc accctgctct aacacactgg atgtgcggct
     1021 cgggttcagc ctgtgccagg aagaggtgga gtttctgcag aagcggaagg tggcggtgac
     1081 caaggcactg aatcaagtgc tgcaactgga ggagggcctg catgagcatg aggtaccgat
     1141 gatagccatc atggccacag gaggtggcac gaggtctatg gtctccttgt atggccactt
     1201 gctggggctg cagaagctga accttctgga ctgttctgtt tacctcaccg gcttgtcagg
     1261 tgcaacctgg acaatggcta ccttgtacag tgatcctgag tggtcatcca aagacctgga
     1321 gcctgtagtc tttgaggccc ggagacatgt tgtcaaagac aagatgcctg cattgtaccc
     1381 agatcagctc tgcaaatggc aagaggaact ccgacaacac agccaggagg gctacaagac
     1441 cacgttcaca gacttttggg gcaagctggt ggagtacagt ctgggagata agaaaaatga
     1501 atgcaagctg tcagaacagc gagctgctct gtgccgggga cagaaccctc tgcccatcta
     1561 cctcactatc aatgtcaagg atgatgtaag caaccaggat ttcagagaat ggttcgagtt
     1621 ctccccctac gaagtgggca tgcagaagta cggagccttc atccccacgg agctatttgg
     1681 ctctgagttc ttcatggggc ggctgatgaa gaggattcct gagccagaga tgtgctacat
     1741 gctagggttg tggagtagca tcttttccct gaacctgctt gatgcttgga atctgtccca
     1801 cacctcggag gagtttttct ataggtggac cagggagaaa ctgcatgaca tcgaagatga
     1861 tcccctcctg cctgaaatcc ccagatgtga tgctaacccc ttggagacca cagtagtgat
     1921 cccagccaca tggctgtcca acaccttccg agaaatcctc acacacaggc ccttggtgtc
     1981 tgagttccac aacttcctgt acgggttgca gctgcacacc gactacttac agaacaaaca
     2041 gttctgtatg tggaaagaca cagtactgga cactttccca aaccagctga cacagtttac
     2101 aaaacacctg aacctgctgg acactgcatt ctttgtcaac tccagctatg cgcccctcct
     2161 taggccagag agaaaagtcg accttatcat ccatctcaat tactgcgcag gatcccagac
     2221 aaagcccctg aaacaaacct gcgagtactg cacggagcag aatatcccct tccccaacta
     2281 ctccatccag gaggacgaca aaagtctcaa ggagtgctat gtgatggaga atccccagga
     2341 gcctgatgcg cccatcgtgg tctacttccc actcatcaat gacaccttcc agaagtacaa
     2401 ggctccaggt gtagagcgaa gtcctgagga gctagaactg ggccagctga acatctatgg
     2461 accaaagtct ccctatgcca ccaaggagct gacgtacaca gaggccgcct tcgacaagct
     2521 ggtgaagctc tcagagtata acatcctcaa taacaaagac aagctcattc aggccgtgag
     2581 actagcaatg gagaagaaac gcatgaagag ccagtgtccc tcctaggccc gagggagtcc
     2641 tatccatctt gtgtctgctt ctattgtcag aagcatcacc cctcaaacca gacctcacac
     2701 agctggctgg ccctgctctc tggctggggg gtgcagcagc ttggcctggg ctttctagta
     2761 aaatgttaca aatgaacaaa ggagagagag agaaaagaag agtctattgg gttttatacc
     2821 cctggagttt ctctccactt tctgacaagg aaggtaccat ggccacagac tcccacaccg
     2881 tctcaagtat agaatgtgac tatgtgtgca cagagagtgg ctagttccca agagacctca
     2941 ctcacccttc cagctggagg caaagctccc ctaagcctcc ccttccctcc tctccttttc
     3001 ttcctcccat ggccagccta gagaaatgtt caggaagacc aaaaactgct ttaagtttct
     3061 ctagaaaatg ctttgtaaat ttaaggtaat tcattgcatc cgcggaattt ttgttgtcga
     3121 taatattttg tgatttattt ttatttttta ctacgatgaa gagaatatta ggggaaagcc
     3181 tgacctctga cacagcaaag ccaaacaggt gactaaccca tgtcactagt gcctcttcag
     3241 ctaccagagc cctgggctag agatcatgtg agcttgacta ggactaggtc taagcctcag
     3301 ctccagtgaa accaggcact gtggacaacg cagcagaagc tcacagagtg aggatccagg
     3361 atgccatcca gggaggcctg ggcaggctgt gggcaagcag cactgggtac acgacacttc
     3421 ccagtgccat taatgatcgc tggcgtctct ctggcttgca gatggggtta tttatttata
     3481 agtatgattc ctcttattta tcacagaaac actatgacct gtttatctaa gcccttatac
     3541 agtgactcag acaataaggt taggaaggat gacctcagaa tggtgagttt ggattctgac
     3601 aaagacctca gctttggagg agaatctgtg gggaagccct ggtcacccag acacccagac
     3661 tccaggcttc actaaaggat agaagggggc ccctgcagtg agcagggaga agcagaaggg
     3721 cagttaggga tgcggccttt gtggagccca acaagcctgg aggacatgat ccctccacag
     3781 ttctggttgt tgaaagatga gtggtaccca acagtttgtt tcaaatgggc tcctgcttcc
     3841 atcgttgcta cttgaagtat gattggggct gactgtgaac tcagacccag ccacactggc
     3901 aggaacccat actgtaaaaa gaccagtgtc cttctctctt ctccagactt acctgtcagt
     3961 cacatctggt gaggggattt gactcctatg tggataacat tggggaagaa tggatttatt
     4021 actgtcttct accagcttgg ggagcatgag tccacagacc cctttgagcc gttactaagc
     4081 tgggcttctg agcctgcaaa actgacccct gcccaggtgc tgctgttgtg agcaggacgt
     4141 ccagaacttc ctctagccct ccaagtagct ggctgctttt gcttccctca tgcagggaac
     4201 aggctctgaa ttatcagaga aagccagaac atttttgcaa ggcgaaggca gccatgcctt
     4261 ggactcacca tagcatacaa agtttataag agcactgtac catttgagca cagaataaag
     4321 tggttatgaa ggcgaa
//
