LOCUS       XM_001080051            3184 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus phospholipase A2 group IVD (Pla2g4d),
            mRNA.
ACCESSION   XM_001080051
VERSION     XM_001080051.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_001080051.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3184
                     /gene="Pla2g4d"
                     /note="phospholipase A2 group IVD; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4 long
                     SRA reads, 14 Proteins"
                     /db_xref="GeneID:691905"
                     /db_xref="RGD:1593372"
     CDS             1..2478
                     /gene="Pla2g4d"
                     /codon_start=1
                     /product="cytosolic phospholipase A2 delta"
                     /protein_id="XP_001080051.2"
                     /db_xref="GeneID:691905"
                     /db_xref="RGD:1593372"
                     /translation="MWSGDRRVVMESLSPERLPVYPRQEEASVFCQLTVKILEARSLP
                     RADLLSKADPYVTLRLPTASGRKFKTQTVTNSSNPVWNETFSFLIQSQVKNILELTVY
                     DEDLITKDDICFKISYDISEILPGQLVQKTFSLNPQGPEELDVEFLVERTCDPPENLI
                     TNNVLVARELSHLDVSLDRAGSTTMAAGQDKLELELMLKGSYEDTQTFLPDTAFTLSF
                     HYMRSQDTELNGYLRSSRNSDWNSDTSATPFNVPLTLLAAGKEVTVDIPATKDPERKL
                     QLKTDSCPKELSVRLSYGLCPEEQAFLGRRKKLVAAALKQALQLDEDLKEDEVPVVGI
                     NAEGGGMRAMISLYGHLLALQKLGLLDCVTYFSGISGATWTMAHLYRDPEWSQKDLEG
                     PISHAREHVAKSLLKEFLPEHLASYRQTLKLREEQGYTVTIADLWGLVLESKLHGQVT
                     DQKLSEQRAALERGQNPLPLYLSLNVKENHLETLHFKEWVEFSPYEVGFLKYGGFVPS
                     ELFGSEFFMGRLMKRLPESQICFLEGIWSNLFSVNLMDIWYDITSGRDSNDFPVDVQN
                     SEKEPSSSAGVSSGVEAPWLQPGTALAQAFKGFLTGRPFNQRSANFLHGLQLHRDYCN
                     QRDFSTWADCNLDDTPNQLTPQDPQLCLIDAGCFMNSSCPSLFRSGRQVDLILSFNYN
                     QSFPFKGLQQSGKYCSAQGLPFPRVEPSPEDHLQPQECYLFSDPTCPEAPAVLHFPLV
                     NDSFQDHSAPGVRRSPDELKAGQVDLTGVASPYFLYNMTYKNEDFDRLLRLSEYNIQN
                     NQGTILQALKTVLKRRASETRPLGVKT"
     polyA_site      3184
                     /gene="Pla2g4d"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgtggagtg gagatagaag agttgtcatg gagagcctgt cacctgagag actacctgtc
       61 tatcctcgcc aggaggaggc ctctgtcttc tgccagctca ctgtgaaaat cctggaggct
      121 cggagtctgc ccagggctga cctgttgagc aaggccgatc catatgtgac tctgcgactg
      181 ccaacagctt ctggaaggaa attcaagacg caaacagtca ccaactccag taatcctgtg
      241 tggaacgaga ccttcagttt cctcatccag agtcaggtca agaatattct agaactgact
      301 gtctatgacg aagacttaat tacgaaagat gacatctgtt tcaagatttc ttatgatatc
      361 tcagaaatcc tccctggaca actggtccag aaaaccttca gcctgaatcc tcagggacca
      421 gaagagttag acgtggagtt cctggtggaa agaacgtgcg accctccaga aaacctcatc
      481 accaacaatg ttcttgtggc ccgagaactg tcacacctgg atgtctccct ggacagagct
      541 ggaagcacca ccatggcagc aggtcaggac aaactagagc tggagcttat gctgaagggg
      601 tcgtatgagg acacacagac atttttaccg gacacagctt ttaccctcag cttccactac
      661 atgaggagcc aagacacaga gctgaacggg tacctgagga gctccagaaa cagtgactgg
      721 aactcagata cctcagcaac acctttcaat gtacccctga cgttgttggc tgcagggaag
      781 gaggtgaccg tagacattcc tgctacaaag gatccagaaa ggaagctgca acttaagaca
      841 gacagttgcc ctaaggagct gtctgtgcgg ctgagctatg ggctctgtcc cgaggagcag
      901 gccttcctag gcaggaggaa aaagctggtt gctgctgccc tgaagcaggc tctgcaactg
      961 gatgaagact tgaaagaaga tgaggtccct gttgtgggca tcaacgccga gggaggaggt
     1021 atgcgggcta tgatctcact ctacggccat ctattggcac ttcagaagtt ggggctcctg
     1081 gactgtgtga cctacttcag tggcatctct ggcgctacat ggacaatggc ccacctgtac
     1141 cgggacccag agtggtcaca gaaggacctt gagggaccca tcagtcatgc cagggagcat
     1201 gtggctaaaa gcctgctgaa ggaattcctc cccgaacact tggcaagcta ccgtcagact
     1261 ctgaagcttc gggaagagca gggctacacc gtcaccatag cagacctgtg gggcctggtg
     1321 ctggagtcca agctgcatgg gcaggtgaca gatcagaagc tgtcagaaca gagagctgca
     1381 ctggagcggg gtcagaaccc tttgcctctc tacttgagcc taaatgtcaa agagaaccat
     1441 ctggagaccc tccactttaa ggagtgggtg gagttctctc cctatgaagt tgggttcctg
     1501 aaatatggag gcttcgtccc ttctgagctc tttggctcgg agttcttcat gggacggctg
     1561 atgaagaggc ttcccgagtc ccagatttgc tttctggaag gtatctggag caatcttttc
     1621 tctgtgaact tgatggatat ctggtatgac atcacctctg ggagagactc gaacgatttc
     1681 cctgtggatg tccagaactc agagaaggag ccctcatcct cagcaggagt ctcctctggt
     1741 gtggaggccc catggctgca gcctggaaca gctctggctc aggcattcaa gggctttctg
     1801 actggcaggc cattcaacca gcgtagtgcc aacttcctcc atggtctcca gctgcaccgg
     1861 gactactgta accagagaga cttctccacc tgggcagatt gcaacctaga tgacaccccg
     1921 aatcagctga ccccacagga ccctcagctc tgcctaattg atgctggctg cttcatgaac
     1981 agcagctgtc cctccctgtt ccgctcaggt cgccaagtgg acctcatact ctccttcaac
     2041 tacaatcagt cctttccctt taagggactg cagcaatctg ggaaatactg cagcgctcag
     2101 ggcctgccct tcccccgtgt ggagcccagc cctgaagacc acctccagcc ccaggaatgt
     2161 taccttttct cagaccccac ctgcccggaa gccccagctg tgctgcactt ccccctggtc
     2221 aatgactcct tccaggacca ctcagcccct ggtgtccggc gcagccctga tgagctcaag
     2281 gctgggcagg tggatctcac aggggtcgcc tccccctact tcctgtacaa catgacctac
     2341 aagaacgaag attttgacag gttgcttcgg ctctctgagt acaacattca gaacaaccag
     2401 ggcactatcc tgcaggccct gaagacagtt ctgaaacgga gggcttcaga gaccaggcca
     2461 ttgggagtga agacatgagg cttctcaggg ggtctctgag gctctgaaga ccacaatatg
     2521 accctccaac ttccaagggc ttaactcagc ctgcagctag gcacagctgc ctctggctgg
     2581 agctcccagt tctccaagtc ttgggcttcc attgcagcta gtcttgccgc ccagaggagc
     2641 tgtaccccac tctccattct ctccctgggt ttctggctgg tctgagagga gtcgaaaacc
     2701 tcccgtgacc agtgcataag acacctgacc acagcaggct ttcattgcca atggagtttg
     2761 ttaaacagtt tttgtagttt aaacttgaat cctgcaatct tcaacttact gacttaaata
     2821 ttttttggtg gactcttcag ggtattcagt tatggatctt gcctctacaa aagagatggt
     2881 cttccttctt cctccctgat tcaaatgtgt tttatttctt tttctgactg aattgccctg
     2941 actagaaccc ctgacattgg gttcaactga cctggcaaga gcagccatcc tggtttttat
     3001 ccctggtgtg gaaggaaaac atcaaggcgt cctaccattt tgctcttcag tcttaagtgg
     3061 ttttgggttt tgtcaggttg aaaccgttca gttcgggccc tagtttgttg agtggttttg
     3121 ttgttgttta tatcataaaa aggtattgaa tgttgtcatg taacttttgt gtctattggg
     3181 aaaa
//
