LOCUS       XM_039106322            4549 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus plakophilin 4 (Pkp4), transcript
            variant X20, mRNA.
ACCESSION   XM_039106322
VERSION     XM_039106322.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106322.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4549
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4549
                     /gene="Pkp4"
                     /note="plakophilin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 52 ESTs, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295625"
                     /db_xref="RGD:1307840"
     CDS             620..3796
                     /gene="Pkp4"
                     /codon_start=1
                     /product="plakophilin-4 isoform X16"
                     /protein_id="XP_038962250.1"
                     /db_xref="GeneID:295625"
                     /db_xref="RGD:1307840"
                     /translation="MNSYSDSGYQEAGSFHNSQTVNKADSRQHPFTGSTSNHVVRNSR
                     AEGQTLVQPSVANRAMRRVSSVPSRAQSPSYVTSTGVSPSRGSLRTSLGSGFGSPSVT
                     DSRPLNPSTYSSSTLPAQRAASPYSQRPASPTAVRRVGSVTSRQTSNPNGPVPQYQTT
                     TRVGSPLTLTDAQTRVASPSQGQVGSSSPKRSGMTAVPQHLGPSLQRTVHDMDQFGQQ
                     QYDIYERMVPPRPDSLTGLRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVY
                     RSPNHGTVELQGSQTALYRTGSVGIGNLQRTSSQRSTLTYQRNNYALNTAATYAEPYR
                     PVQYRVQECSYNRLPHTGPADDGATRSPSIDSIQKDPSTFKGVIHCLQTSVVFWEFAW
                     RDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEVYRLGGIKHLVDLLDHRV
                     LEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVRELVTGVLWN
                     LSSCDAVKMTIIRDALSTLTNTVIVPHSGWNDSSFDDDHKIKFQTSLVLRNTTGCLRN
                     LSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYRLELEV
                     PQARLLGLNELDDLLGKESPSKDSEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSP
                     KGVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQNLSAGNWKFAAYIRAAVRKEKG
                     LPILVELLRMDNDRVVSSVATALRNMALDVRNKELIGKYAMRDLVNRLPGGNGPSILS
                     DETVAAICCALHEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLN
                     TLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKSHPSLSTTNQQMSPVIQSVGSTS
                     SSPALLGIREPRSEYDRTQPPMQYYNSQGDTTHKGLYPGSSKPSPIYISSYSSPAREQ
                     NRRLQHQQLYYQDDSTRKTLDAYRLYLQSPRSYEDPYGDDRVHFPASTDYSTQYGLKS
                     TTNYVDFYSTKRPSYRAEQYPGSPDSWV"
ORIGIN      
        1 gccaggctgc cgcacttcgg ccagtttgct ccggtgccgc agcggcgacc cttcggctcg
       61 gatgtccctg gtccctggag cgacaacggc ctccacctga gctggaaaga ggaatgcccg
      121 cccctgaaca ggcctcactg gtggaggagg ggcaaccaca gacccaccag gaagctgtct
      181 ccactggccc aggcatggaa cccgagacca cagccaccac tattctagct tccgtgaagg
      241 agcaggtgtt tacatccctg agtacattgg gatgactggc atgtagagct gctccagctg
      301 ccagtcagaa tcggaacatg caggatactt gtgcgtctgc aagagcttca gtttcaacga
      361 ctcacccgag aactggaagt ggaaaggcag attgttgcca gtcagctaga aagatgtagg
      421 cttggagcag aatcgcccag catcgccagc accagatgtg ccaaatactg gtgtaagcaa
      481 acctagagtt tctgacactg ttcatcccaa caactatctc atcaggacgg agccagagca
      541 aggggccctc tactcaccag agcagacgtc tctccatgaa agtgagggat cgttgggaaa
      601 ctcaagaagt tcaacacaga tgaattctta ctctgacagt ggataccagg aagcagggag
      661 tttccacaac agccagaccg tgaacaaggc agacagtaga cagcatccat tcacgggatc
      721 aacaagcaac catgtggtga ggaattcgag agcagaagga caaacactgg ttcagccatc
      781 agtagccaat cgggccatgc gaagagttag ttcagttcca tctagagcac agtctccttc
      841 ttatgttacc agcacaggcg tgtctccttc aagggggtca ctgagaactt ctctgggtag
      901 tggatttggc tctccatcag tgacggactc ccgacctctc aaccccagta cttactcctc
      961 cagcacgctc cctgctcagc gggccgcctc tccgtactca cagagacccg cctccccgac
     1021 agccgtgcgc cgggtcgggt ccgtcacctc ccgacagacc tccaatccca acggaccagt
     1081 ccctcagtac cagaccacca ccagggtggg gtccccactg accctgactg atgcccagac
     1141 tcgagtagct tccccatccc aaggccaagt ggggtcatcg tccccgaaac gctctgggat
     1201 gaccgccgta ccacagcatc tgggaccttc actgcaaagg actgttcatg acatggacca
     1261 attcggacag cagcagtatg atatttacga gaggatggtt ccaccacggc cagacagcct
     1321 gacaggctta cggagttcct atgccagtca gcatagtcag cttggacaag atcttcgttc
     1381 agctgtgtct cctgacttgc acatcactcc tatatatgaa gggaggacct actacagtcc
     1441 agtgtaccgc agcccaaacc acgggaccgt ggaactccaa ggatcacaga cagcactgta
     1501 ccgcacaggc tcagtaggca ttgggaatct acaaaggact tccagccaga gaagcaccct
     1561 tacataccaa agaaataact atgctctgaa cacagcagct acctatgcgg agccctacag
     1621 gcctgtacag taccgagtcc aagagtgcag ctataaccgg ctgccacaca cagggccggc
     1681 tgacgatggt gccacgagat ccccatcaat agacagcatt cagaaggacc ccagtacttt
     1741 taaaggtgtt attcattgtc ttcagacatc tgttgtgttt tgggagtttg cctggcgtga
     1801 ccctgagctg ccagaagtca ttcacatgct gcaacaccag ttcccgtccg tgcaggcgaa
     1861 tgccgcggcc tacctgcagc acctgtgctt tggcgacaac aaagtgaaga tggaggtgta
     1921 caggctaggg ggaatcaagc atctggttga cctattggac cacagggtgt tggaagttca
     1981 gaagaatgct tgtggtgccc tgcgaaacct tgtgtttggc aagtctacag atgaaaataa
     2041 aatagcaatg aagaatgtcg gtggcatccc tgccttgctg cgactgttga gaaagtccat
     2101 tgatgcagaa gtaagggagc ttgttacagg ggttctttgg aatttatcct catgtgacgc
     2161 tgtaaagatg acaatcattc gagatgctct ctcaacctta accaacactg tgatagttcc
     2221 acattctggg tggaatgact cttcctttga tgatgatcat aaaattaaat ttcagacctc
     2281 gctggttctg cggaacacga caggttgcct gaggaacctc agctctgccg gggaggaagc
     2341 ccgcaagcaa atgcggtcct gtgaggggct ggtagactca ttgttgtatg tgatccacac
     2401 gtgtgtgaac acttctgact acgacagcaa gacagtggag aactgcgtgt gtaccctgag
     2461 gaacctatca taccggctgg aactagaagt ccctcaggcc cggctgctcg gactgaatga
     2521 actagatgac ttactaggaa aagagtctcc cagcaaagac tcggaaccaa gctgctgggg
     2581 gaagaagaag aagaagaaaa agagaacgcc acaagaagat caatgggatg gagtcgggcc
     2641 tatccctgga ctgtccaagt cccccaaagg agtcgagatg ctctggcacc cgtcagtggt
     2701 aaaaccgtat ctgactcttt tagcagaaag ttccaaccca gccaccttgg aaggctctgc
     2761 cggatctctc cagaacctct ctgctggcaa ctggaagttt gcagcatata tccgggcagc
     2821 tgtccggaag gaaaaagggc ttcctatcct tgttgagctt ctaaggatgg ataatgacag
     2881 agtcgtctct tctgtggcca ctgccttgag gaacatggcg ctggacgttc gcaacaagga
     2941 gctcataggt aaatacgcca tgcgagacct ggtcaacagg cttcccggtg gcaacggccc
     3001 cagcatcctg tccgatgaga ctgtggcagc catctgctgt gctctgcatg aggtcaccag
     3061 caaaaacatg gagaacgcca aagctctggc tgactcggga ggtatagaga agctggtgaa
     3121 cataaccaaa ggcagaggag acagatcctc tctgaaagtg gtgaaggcgg cagcccaggt
     3181 cttgaataca ttgtggcagt atcgggacct ccggagcatt tacaaaaagg atgggtggaa
     3241 tcagaaccat tttattacac ctgtgtccac gctagagcga gaccgattca aatcacaccc
     3301 ttctctgtcc accaccaacc aacagatgtc acccgtcatt cagtcagttg gcagcacctc
     3361 ctcctcacca gcactgttag gaatcagaga gcctcgctct gaatacgata ggacccagcc
     3421 acctatgcag tattacaata gccaagggga caccacacat aaaggcctgt accctggctc
     3481 cagcaaacct tcaccaatat acatcagttc ctattcctca ccagcaagag aacaaaacag
     3541 acggctacag caccaacagc tgtactatca agatgactcc accaggaaga ccttggatgc
     3601 ttacagactg tacctgcagt ctcctcgcag ctatgaagac ccttacggtg atgaccgagt
     3661 tcacttccca gcttctactg attactcaac gcagtatgga ctgaaatcaa ccacaaatta
     3721 cgtagacttt tactccacta aacgaccttc ttatagagcc gaacagtacc ctgggtcccc
     3781 ggactcctgg gtgtagcatc aagacggctg cctgccgagg gccgattttc ttctgactct
     3841 gcttggactg aggggagtcc gtcttgctga tgatggtgac cgtgaaagtg aagtggaagg
     3901 gatgagtgaa gaggttttgt ttgttttttt tttttctttt ttgaggaatt ttcagggaag
     3961 tgaagaaacc cttgggagag gactttctac gctctgtgta ggtgttagat ctaattactt
     4021 gtagattcta gtggtgaagg tgtgggtgac gtgctgagag gcttgagaag tgggtgagat
     4081 gagaggggta tgtgtaggtc aaatcaaatg acagatgatt tttttaatgt gaataaagtt
     4141 atgttcagat agtttgtaca gaaaaaaata ataataaaat ggatgccctt catgttttat
     4201 tgctattact aaatgtcaag attgtatgct attatgtctt gtaaaaattc cttctgttgg
     4261 tgtaaatatg gaaatgccac attggttaag tgccatcaat tgtaatgcag tgtgtcattt
     4321 gaaaagagat ttgaagaact gacagcttaa agcccaaacg ggaagcctga ggaactgtta
     4381 acagttgaca acacactctg acgccctgtt ttcagtgagt agtgaactct ggaagcacaa
     4441 agtccagcgt gacagcagcg ccatgctcat cccccctttc acaggacact tcactgccat
     4501 tttctatgca catggaagaa gaataaatgt gggatttcat cctggagaa
//
