LOCUS       XM_039106306            5405 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus plakophilin 4 (Pkp4), transcript
            variant X2, mRNA.
ACCESSION   XM_039106306
VERSION     XM_039106306.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106306.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5405
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5405
                     /gene="Pkp4"
                     /note="plakophilin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 51 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295625"
                     /db_xref="RGD:1307840"
     CDS             984..4652
                     /gene="Pkp4"
                     /codon_start=1
                     /product="plakophilin-4 isoform X1"
                     /protein_id="XP_038962234.1"
                     /db_xref="GeneID:295625"
                     /db_xref="RGD:1307840"
                     /translation="MPAPEQASLVEEGQPQTHQEAVSTGPGMEPETTATTILASVKEQ
                     ELQFQRLTRELEVERQIVASQLERCRLGAESPSIASTRYRASGSIFMHPNYVSDSTEK
                     SFPWRSTDVPNTGVSKPRVSDTVHPNNYLIRTEPEQGALYSPEQTSLHESEGSLGNSR
                     SSTQMNSYSDSGYQEAGSFHNSQTVNKADSRQHPFTGSTSNHVVRNSRAEGQTLVQPS
                     VANRAMRRVSSVPSRAQSPSYVTSTGVSPSRGSLRTSLGSGFGSPSVTDSRPLNPSTY
                     SSSTLPAQRAASPYSQRPASPTAVRRVGSVTSRQTSNPNGPVPQYQTTTRVGSPLTLT
                     DAQTRVASPSQGQVGSSSPKRSGMTAVPQHLGPSLQRTVHDMDQFGQQQYDIYERMVP
                     PRPDSLTGLRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVEL
                     QGSQTALYRTGSVGIGNLQRTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQECS
                     YNRLPHTGPADDGATRSPSIDSIQKDPSTFKGVIHCLQTSVVFWEFAWRDPELPEVIH
                     MLQHQFPSVQANAAAYLQHLCFGDNKVKMEVYRLGGIKHLVDLLDHRVLEVQKNACGA
                     LRNLVFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVRELVTGVLWNLSSCDAVKMT
                     IIRDALSTLTNTVIVPHSGWNDSSFDDDHKIKFQTSLVLRNTTGCLRNLSSAGEEARK
                     QMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYRLELEVPQARLLGLNE
                     LDDLLGKESPSKDSEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPS
                     VVKPYLTLLAESSNPATLEGSAGSLQNLSAGNWKFAAYIRAAVRKEKGLPILVELLRM
                     DNDRVVSSVATALRNMALDVRNKELIGKYAMRDLVNRLPGGNGPSILSDETVAAICCA
                     LHEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRS
                     IYKKDGWNQNHFITPVSTLERDRFKSHPSLSTTNQQMSPVIQSVGSTSSSPALLGIRE
                     PRSEYDRTQPPMQYYNSQGDTTHKGLYPGSSKPSPIYISSYSSPAREQNRRLQHQQLY
                     YQDDSTRKTLDAYRLYLQSPRSYEDPYGDDRVHFPASTDYSTQYGLKSTTNYVDFYST
                     KRPSYRAEQYPGSPDSWV"
ORIGIN      
        1 gctctgatcg acagggttgt gttacagtag atcactgtgc agatgaaaat gtagcaagac
       61 tggtgtggct ccattgggcc gtgggctgca ttacgtcctg ctaatcgaat gcagcttcct
      121 tgacttgtgg ttatttccct gaattcttcc cgtaagaaac tcgaagcttc tacctaaaag
      181 gagacaagtt gctcaactag aataatcaaa ggtgaaatct gattctttcc gacattttta
      241 gtgccaagca gtgaacaaaa ggcttcttca aggcagcaca ttgttcggtg gttctgtgtg
      301 tgagcagccc aatgtattaa acacttcccc atggctgaca gtggagtgcc agtttctgtt
      361 ttcggttctt tgaatagtaa agcctgttct gtcagcagcc atttcattaa atgcctcagc
      421 acaagtgtta gacagagaca caggagacag ggatcctgtc tgaggcttaa gtctgagtag
      481 atgaagaact caagagcaga ggcaaatgtg tgaggatgag cagtgtgtgt tggtgagagg
      541 cagacggtgt cggttggata agacatccac catgaaacta aaagcatttg ggtttttttg
      601 gtggcctgga ggataagttc ttaagcagga ccggtttatg gaatgtgtac aggaggaaga
      661 aatggctcag tgacgcagct gacactcagt ctggaattac tctgtgggca gccttttgcc
      721 gctgtctgaa gggtgccaga gagagcaggc ctacccggcg tggctatgct gagaaagctg
      781 tgtctacgcg agccctccac cttggacaca gggagctgca gggaattctt tccatgttcg
      841 acggtttttg ccttggattg ctttggtggt ctccacactg catgcaggcc ttataactct
      901 ctcctttctt ctccctcctt ttgtcctggc tcttgtcttt tcagcagcac cgagatcaaa
      961 tccaggccct tacacaagga ggaatgcccg cccctgaaca ggcctcactg gtggaggagg
     1021 ggcaaccaca gacccaccag gaagctgtct ccactggccc aggcatggaa cccgagacca
     1081 cagccaccac tattctagct tccgtgaagg agcaggagct tcagtttcaa cgactcaccc
     1141 gagaactgga agtggaaagg cagattgttg ccagtcagct agaaagatgt aggcttggag
     1201 cagaatcgcc cagcatcgcc agcaccaggt acagggccag cggctctatc ttcatgcacc
     1261 cgaattatgt gtcagactca actgaaaagt catttccttg gagatcaaca gatgtgccaa
     1321 atactggtgt aagcaaacct agagtttctg acactgttca tcccaacaac tatctcatca
     1381 ggacggagcc agagcaaggg gccctctact caccagagca gacgtctctc catgaaagtg
     1441 agggatcgtt gggaaactca agaagttcaa cacagatgaa ttcttactct gacagtggat
     1501 accaggaagc agggagtttc cacaacagcc agaccgtgaa caaggcagac agtagacagc
     1561 atccattcac gggatcaaca agcaaccatg tggtgaggaa ttcgagagca gaaggacaaa
     1621 cactggttca gccatcagta gccaatcggg ccatgcgaag agttagttca gttccatcta
     1681 gagcacagtc tccttcttat gttaccagca caggcgtgtc tccttcaagg gggtcactga
     1741 gaacttctct gggtagtgga tttggctctc catcagtgac ggactcccga cctctcaacc
     1801 ccagtactta ctcctccagc acgctccctg ctcagcgggc cgcctctccg tactcacaga
     1861 gacccgcctc cccgacagcc gtgcgccggg tcgggtccgt cacctcccga cagacctcca
     1921 atcccaacgg accagtccct cagtaccaga ccaccaccag ggtggggtcc ccactgaccc
     1981 tgactgatgc ccagactcga gtagcttccc catcccaagg ccaagtgggg tcatcgtccc
     2041 cgaaacgctc tgggatgacc gccgtaccac agcatctggg accttcactg caaaggactg
     2101 ttcatgacat ggaccaattc ggacagcagc agtatgatat ttacgagagg atggttccac
     2161 cacggccaga cagcctgaca ggcttacgga gttcctatgc cagtcagcat agtcagcttg
     2221 gacaagatct tcgttcagct gtgtctcctg acttgcacat cactcctata tatgaaggga
     2281 ggacctacta cagtccagtg taccgcagcc caaaccacgg gaccgtggaa ctccaaggat
     2341 cacagacagc actgtaccgc acaggctcag taggcattgg gaatctacaa aggacttcca
     2401 gccagagaag cacccttaca taccaaagaa ataactatgc tctgaacaca gcagctacct
     2461 atgcggagcc ctacaggcct gtacagtacc gagtccaaga gtgcagctat aaccggctgc
     2521 cacacacagg gccggctgac gatggtgcca cgagatcccc atcaatagac agcattcaga
     2581 aggaccccag tacttttaaa ggtgttattc attgtcttca gacatctgtt gtgttttggg
     2641 agtttgcctg gcgtgaccct gagctgccag aagtcattca catgctgcaa caccagttcc
     2701 cgtccgtgca ggcgaatgcc gcggcctacc tgcagcacct gtgctttggc gacaacaaag
     2761 tgaagatgga ggtgtacagg ctagggggaa tcaagcatct ggttgaccta ttggaccaca
     2821 gggtgttgga agttcagaag aatgcttgtg gtgccctgcg aaaccttgtg tttggcaagt
     2881 ctacagatga aaataaaata gcaatgaaga atgtcggtgg catccctgcc ttgctgcgac
     2941 tgttgagaaa gtccattgat gcagaagtaa gggagcttgt tacaggggtt ctttggaatt
     3001 tatcctcatg tgacgctgta aagatgacaa tcattcgaga tgctctctca accttaacca
     3061 acactgtgat agttccacat tctgggtgga atgactcttc ctttgatgat gatcataaaa
     3121 ttaaatttca gacctcgctg gttctgcgga acacgacagg ttgcctgagg aacctcagct
     3181 ctgccgggga ggaagcccgc aagcaaatgc ggtcctgtga ggggctggta gactcattgt
     3241 tgtatgtgat ccacacgtgt gtgaacactt ctgactacga cagcaagaca gtggagaact
     3301 gcgtgtgtac cctgaggaac ctatcatacc ggctggaact agaagtccct caggcccggc
     3361 tgctcggact gaatgaacta gatgacttac taggaaaaga gtctcccagc aaagactcgg
     3421 aaccaagctg ctgggggaag aagaagaaga agaaaaagag aacgccacaa gaagatcaat
     3481 gggatggagt cgggcctatc cctggactgt ccaagtcccc caaaggagtc gagatgctct
     3541 ggcacccgtc agtggtaaaa ccgtatctga ctcttttagc agaaagttcc aacccagcca
     3601 ccttggaagg ctctgccgga tctctccaga acctctctgc tggcaactgg aagtttgcag
     3661 catatatccg ggcagctgtc cggaaggaaa aagggcttcc tatccttgtt gagcttctaa
     3721 ggatggataa tgacagagtc gtctcttctg tggccactgc cttgaggaac atggcgctgg
     3781 acgttcgcaa caaggagctc ataggtaaat acgccatgcg agacctggtc aacaggcttc
     3841 ccggtggcaa cggccccagc atcctgtccg atgagactgt ggcagccatc tgctgtgctc
     3901 tgcatgaggt caccagcaaa aacatggaga acgccaaagc tctggctgac tcgggaggta
     3961 tagagaagct ggtgaacata accaaaggca gaggagacag atcctctctg aaagtggtga
     4021 aggcggcagc ccaggtcttg aatacattgt ggcagtatcg ggacctccgg agcatttaca
     4081 aaaaggatgg gtggaatcag aaccatttta ttacacctgt gtccacgcta gagcgagacc
     4141 gattcaaatc acacccttct ctgtccacca ccaaccaaca gatgtcaccc gtcattcagt
     4201 cagttggcag cacctcctcc tcaccagcac tgttaggaat cagagagcct cgctctgaat
     4261 acgataggac ccagccacct atgcagtatt acaatagcca aggggacacc acacataaag
     4321 gcctgtaccc tggctccagc aaaccttcac caatatacat cagttcctat tcctcaccag
     4381 caagagaaca aaacagacgg ctacagcacc aacagctgta ctatcaagat gactccacca
     4441 ggaagacctt ggatgcttac agactgtacc tgcagtctcc tcgcagctat gaagaccctt
     4501 acggtgatga ccgagttcac ttcccagctt ctactgatta ctcaacgcag tatggactga
     4561 aatcaaccac aaattacgta gacttttact ccactaaacg accttcttat agagccgaac
     4621 agtaccctgg gtccccggac tcctgggtgt agcatcaaga cggctgcctg ccgagggccg
     4681 attttcttct gactctgctt ggactgaggg gagtccgtct tgctgatgat ggtgaccgtg
     4741 aaagtgaagt ggaagggatg agtgaagagg ttttgtttgt tttttttttt tcttttttga
     4801 ggaattttca gggaagtgaa gaaacccttg ggagaggact ttctacgctc tgtgtaggtg
     4861 ttagatctaa ttacttgtag attctagtgg tgaaggtgtg ggtgacgtgc tgagaggctt
     4921 gagaagtggg tgagatgaga ggggtatgtg taggtcaaat caaatgacag atgatttttt
     4981 taatgtgaat aaagttatgt tcagatagtt tgtacagaaa aaaataataa taaaatggat
     5041 gcccttcatg ttttattgct attactaaat gtcaagattg tatgctatta tgtcttgtaa
     5101 aaattccttc tgttggtgta aatatggaaa tgccacattg gttaagtgcc atcaattgta
     5161 atgcagtgtg tcatttgaaa agagatttga agaactgaca gcttaaagcc caaacgggaa
     5221 gcctgaggaa ctgttaacag ttgacaacac actctgacgc cctgttttca gtgagtagtg
     5281 aactctggaa gcacaaagtc cagcgtgaca gcagcgccat gctcatcccc cctttcacag
     5341 gacacttcac tgccattttc tatgcacatg gaagaagaat aaatgtggga tttcatcctg
     5401 gagaa
//
