LOCUS       XM_039098548            4646 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1),
            transcript variant X6, mRNA.
ACCESSION   XM_039098548
VERSION     XM_039098548.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098548.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4646
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4646
                     /gene="Pknox1"
                     /note="PBX/knotted 1 homeobox 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 22 ESTs, 3 long SRA reads, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:294322"
                     /db_xref="RGD:1305003"
     CDS             444..1754
                     /gene="Pknox1"
                     /codon_start=1
                     /product="homeobox protein PKNOX1 isoform X1"
                     /protein_id="XP_038954476.1"
                     /db_xref="GeneID:294322"
                     /db_xref="RGD:1305003"
                     /translation="MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSDPDAEGVSPPP
                     IESQTPMDADKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEK
                     DGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLL
                     SGEPGSPYSPVQSQQIQSAITGTLSPQGIVVPASALQQGNVTMATVAGGTVYQPVTVV
                     TPQGQVVTQALSPGTIRIQNSQLQLQLNQDLSILHQEDGSSKNKRGVLPKHATNVMRS
                     WLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKK
                     KPAQNRPVQRFWPDSLASGVAQATPGELAMSEGAVVTITTPVNMNVDSLQSLSSDGAT
                     LAVQQVMMAGQSEDESVDSTEDEGGALAPTHISGLVLENSDSLQ"
ORIGIN      
        1 attgatgcgg cgcgcgtcgg cgtcgccctc ctcccattga gcgaggctgt gtcgcgtggc
       61 ccggcgtcgg cgtgacggtt ggacgcgggc gcggcactgc gggtcccgat tgctgcagcc
      121 gcttgtcagt gtgatgaaga ttggcaccca ggtgctgggt gttagagtgg gacgtgtctt
      181 gtggaggact cggcttatct ccatgtgtac cccctgtacc ctgatgatga ccaagtgatt
      241 ccagcccagg ctcctctgct cagtttccgg gaaggtatct tgagacccgt ctgcagcctg
      301 agatgtcctg ctttgtctcc ctcccaagcc acggagctgt tcttagctgt ttgctcacct
      361 cgggacccac ggctctgttc ttccagacac cattcgcttc tcactcaaga tgatctgatg
      421 tctgaagtga actctcatca accatgatgg ctacacagac gctaagtata gacagctatc
      481 aagatggaca acaaatgcag gtggtcactg agttgaaaac agagcaggat cccaactgct
      541 ctgacccgga tgcagaagga gtgagtcctc ctcccatcga gtctcagacc ccgatggatg
      601 ccgacaagca ggccatttat aggcacccgc tatttccatt gctagctttg ctgtttgaga
      661 aatgtgagca gtccacacag ggatcagaag gcacgacgtc cgccagcttc gatgtggaca
      721 ttgagaactt tgtcaggaag caagaaaagg acgggaagcc cttcttctgt gaagatccgg
      781 aaacagacaa cttaatggtg aaagcaatcc aggtcctgcg tattcatctt cttgaactgg
      841 agaaggtgaa cgagctctgt aaagacttct gtagtcggta cattgcctgt ctgaagacaa
      901 aaatgaacag cgagaccctg ctgagtgggg agcctggaag tccgtactcc ccagtgcagt
      961 cccagcagat tcaaagcgcc atcacaggca ctctcagccc ccagggaatc gtggtgccag
     1021 catcagccct gcaacagggg aatgtaacca tggcaacagt ggcaggtggc acagtgtacc
     1081 agcctgtcac cgtcgtcact ccacaaggcc aagtggtcac gcaggcatta tctcctggga
     1141 caattaggat ccagaactcg cagcttcaat tgcagttgaa ccaggatctc agcatcttgc
     1201 atcaagagga cggctcctcc aagaacaaga ggggcgtcct gccgaagcac gccaccaacg
     1261 tgatgcgttc ctggctcttc cagcacatag ggcatcccta ccccaccgag gatgagaaga
     1321 agcagattgc tgctcagaca aacttgacac tgcttcaagt caacaactgg ttcatcaatg
     1381 cccgaagacg gattctccag ccaatgttgg attccagctg ttcagagact ccaaaaacaa
     1441 agaaaaagcc tgctcagaac aggccagttc agaggttttg gccggattct cttgcatcag
     1501 gagtggcaca agcaacaccc ggagagctcg ccatgtcgga aggtgccgtt gtgaccatca
     1561 ccacacctgt aaacatgaat gtggacagcc ttcagtccct gtcctcagac ggggccaccc
     1621 tggcggtaca gcaggtcatg atggcggggc agagtgagga cgagtcggtg gatagcacag
     1681 aagatgaggg tggcgccctg gcacccacac acatcagcgg gctggtgctg gagaacagcg
     1741 actcccttca gtaggaacgg agtggaacgg ccagtgtgga gcctggacgc cggactcttt
     1801 actgtttgca cagcaaacat tttacagttt tctttgtaac atgttttata tgtagatata
     1861 gaagagtgca cttttgtatc tcacagcttc aagacgtctt cgctggtgca gcagcttcct
     1921 tcagatgtgc gtgtatgggt ttttaatgct agaaacgtga tgagtggccc ctgccccttg
     1981 agtccctgac gagattaagg aacagtgctg ccattttcta aaaaattatg cagttgcaat
     2041 tgagttctgt ggtttacagc aggtctgggg gctgctgcca gtgtcgccca cgggtctgaa
     2101 agatgacctg cactcgggct gcagagcgag aggacgctgg ccctggtggg cggtgagtgc
     2161 tcacaacaca cttcagttct ctcgggcagc atttgcctgt ttcatttgct atatagaaaa
     2221 agaaactcct atttttacct tgctgggatt attggataaa aagctatttt tataaatcag
     2281 ttattaattg gattatgact atattgagga taaatttcta gagaagcaac agcacacgct
     2341 tgtctttcta ctcggaaagt tgtgaaaggc agccacccat gcatggcctc ctgctccctg
     2401 cggaagagga ggaggctcac cttagctgct aaaagggaac aactgtcacg tgagctttga
     2461 tatctccagt ttctgttcat atatgatgtg cagattgtgt tttacactcg ctgtagcatc
     2521 tcacagagtg tgctagcatc tcacagagtg tgctagcatc tcacagagtg tgctagcatc
     2581 ttacagagtg tgctctgtag gacgtacggt tagtgagggc tctgccgtgc ctcgtctgac
     2641 tgcagttacg tggctgccgc ctggccatgt taactgggtg gtaattttag attttttttt
     2701 ttagttaaaa cccgttatac atagaatgtt tattataaac taatataaag tgtgctctac
     2761 accactggct cagagctggg gtaaacagca aacccctaaa ctgtccttct gactagaaga
     2821 cacctggaag ttagaactgt ggaggtgcca tggcggtggg ccactggtgg ctctcactgc
     2881 cactcccctc cttcttgggt cctcccctct ccgttcccac tccagcttca ggacagtttg
     2941 ggaacttcat ttcccagtgt caaggcagag cagactgtag gctgaggtct ggtttgattc
     3001 attttggttt acttgggaag ctttctctta ggaaacaagt gcccgcttca tgctgagcgt
     3061 ctgtttccac agtgcgccga ggcccacctg ctgaaaggga accgctgtgc cttgggcccc
     3121 atgggtggta attgcttatg gaccaaggtt accctaaggg gagctcgtta gccaattcac
     3181 acttttctgg aacacttcac agtcccccca aatgtcttga ttctcttcag ccattgagca
     3241 cacctggaca gccaagtagt cagcacgaaa agtgggggct cctttagaac cacttacggt
     3301 gcctccacta caagaaaaag aaaacagcaa aataaacaaa acctaaaagc tcccagcaac
     3361 tccttagagg agagaaggac atcttaagca gcccttctcc tccctattca cgactgcttt
     3421 aggatttaag tcaggcgcac ggaagcctca cagtcagctg gctacactgg gtttagagca
     3481 gaggtacatc accctgcgag ccctgcagaa gtctgccact cccctccgca aaggatgcac
     3541 agcccctgcc gtcccgcctc tgtcccagct gctctagctg ggatttgaac accatgactc
     3601 tcgtgtcctt cccagttgag atcatcttcc ctaagcactg aactctcacc tgctaacccc
     3661 agaggaaacc atgaagatca taagagatcc tgggcatggt gacacactcc tgttatccca
     3721 acactcagga gcctgagaca ggaggtaagc ctgggctatt taacttgacc ctgtctaaaa
     3781 aaaaaataaa aaagggttgt aaaagagctg gcacagggtc atatccttcc acctccccat
     3841 gcatagagat gcatagagtg agtcctgtga ggcaagcctt gctggttcat agagttcctg
     3901 tccagcagac ttgtctcccc gttgcacctt ttcaagacac ctgattactg ggcattgtgg
     3961 catttgcctg tatacaagca cttaggaagc tgaagcagga ggattgctgg gaggttgaat
     4021 ctgcctctgg tgcctaggga aaccctgtct cacaaaacca agcaaaattc ctgctctcct
     4081 ttcccctggc cagtggagaa aacctgaaag tacatctcct ttgagctttg tttaaatggc
     4141 cggattctag cattcgttcc cgttaaagtt ctccctaaca ttggagccct ttgaatgtct
     4201 tctgagacct acagtcaacc cgtgtcatac ctgctgtttg gctgcctagc agaaaatcta
     4261 gactggttga cccacccatc tggtgggctc cggttttctg cttccttgag tccagattgt
     4321 cgaatagaag tgtatatgca atatgcaccg tgacccttcc cgctagggct gatgggccac
     4381 tgtgtagcct gctgcgtggc cggcgcacct gtgggggctg cgggagactt gctcctcccc
     4441 catggctggc agggaacgcc catcccgcag gcccctccca caggtagtga cggaacccgc
     4501 aggctgcctt cttcagttaa gttccgtctt tgaaactgac aatctttaaa atgtgaatac
     4561 tgtaacaata tgttttcttg gattgttgtc tttaaaagga ttttttgtga agcaactgat
     4621 ttatcaaaga aaaaaaaatt aaaacc
//
