LOCUS       NM_001106156            2473 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus polycystin 2 like 2, transient receptor potential
            cation channel (Pkd2l2), mRNA.
ACCESSION   NM_001106156 XM_001061050 XM_226056
VERSION     NM_001106156.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473974.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_226056.4, XM_001061050.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..2473
                     /gene="Pkd2l2"
                     /note="polycystin 2 like 2, transient receptor potential
                     cation channel"
                     /db_xref="GeneID:291683"
                     /db_xref="RGD:1310272"
     exon            1..75
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1910
                     /gene="Pkd2l2"
                     /note="polycystic kidney disease 2-like 2 protein"
                     /codon_start=1
                     /product="polycystin-2-like protein 2"
                     /protein_id="NP_001099626.1"
                     /db_xref="GeneID:291683"
                     /db_xref="RGD:1310272"
                     /translation="MSEATWWHRGGTSKHDLHYRREAEVNTTLEELLLYFIFLINLCI
                     LTFGTVNPHMYYLNKVMSSLFVDTSLPDDERSSFRSIRSITEFWKFMEGPLVEGLYWD
                     SWYGNTQLDSVKNSSLIYYENILLGVPRVRQLRVRNSTCQVYPAFQSLASDCYNKYTA
                     ENEDFSDFGLKHDPEWRHSAPSSTAPWHWGFVGVYRDGGYMVTLSKSKSETKAKLADL
                     RQNNWIGRGTRAVFIDFSLYNANVNLFCIIRLLAEFPATGGILTSWQFYSVKLIRYVS
                     YYDHFIASCEIIFCIFLLVFITQELRKLNEFKSAYFRSVWNWIELLLLVLCFLAVSFY
                     AYCNVQCFLLLGQLLRSTESYPDFYFLAYWHIYYNNIIAITIFFAWIKIFKFISFNET
                     MSQLSSTLSRCMKDIVGFAIMFFIIFFAYAQLAFLVFGSQVDDFSTFQNSIFAQFRIV
                     LGDFNFAGIQQANWILGPIYFITFIFFVFFVLLNMFLAIINDTYSEVKADYSIGRRPD
                     FELGSIIKKSCFNILEKLRLRKAQNNEDKKMKTSVDLAQARKEGFDESEIQEARQMKR
                     WKERLEKKYYSTEIQDDYQPVTQQEFRELFLYAVELEKELHYLSLKLNQVMRKLH"
     exon            76..177
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            178..311
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            312..568
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            569..790
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1019
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1190
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1372
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1493
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1595
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..1660
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1712
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1713..1825
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1826..1926
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1927..2473
                     /gene="Pkd2l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtggaaccg gcagagccgc acccgccgtg tggtcctgtc ggtgatgtcc gaggcgactt
       61 ggtggcaccg aggagggact tcaaaacatg acctgcatta ccgaagggaa gcggaggtta
      121 acaccacact tgaagagttg ttactatact ttatttttct aataaatcta tgcatattga
      181 cttttgggac ggtcaaccca catatgtact acttaaacaa agtcatgtca tctctgtttg
      241 tggacacttc tctacctgat gacgaaagaa gcagctttag gtccattcgc agcataactg
      301 agttctggaa gttcatggaa ggacccctcg tggaaggctt gtactgggac tcgtggtacg
      361 gaaacacaca gctggacagc gtgaagaaca gcagcctcat ctactacgag aacattctcc
      421 tcggcgtccc cagagtgcgg cagctgcgag tccgaaacag cacttgccag gtctacccag
      481 ctttccagtc cctagccagc gactgttaca acaaatacac agcagagaat gaggacttct
      541 ctgattttgg cctcaaacat gatccagaat ggaggcactc ggctccttcc agcaccgccc
      601 catggcactg ggggtttgtc ggcgtctacc gagatggagg gtatatggtc actttatcaa
      661 aatcaaagtc tgaaaccaaa gccaaactcg ctgacctgcg gcagaacaac tggatcggca
      721 gagggaccag ggctgtcttc attgattttt cattgtacaa tgctaacgtc aacctgtttt
      781 gtatcatcag gctgctggcg gagttccctg cgacaggcgg gatcctcact tcctggcaat
      841 tctactctgt gaagctcatc agatacgtct cctactacga ccacttcatt gcctcctgtg
      901 aaattatatt ttgtattttc cttttggtct tcataacaca agaactgaga aaactgaatg
      961 agtttaagtc tgcctatttc agaagtgtct ggaactggat agaactgctg cttttggtgc
     1021 tctgtttcct tgccgtgtct ttctacgcat actgtaacgt acagtgtttt ctcttacttg
     1081 gacagctgct gaggagcacc gaaagctatc cggactttta cttccttgca tattggcaca
     1141 tttactataa caacataatt gctatcacga tcttctttgc atggataaag atattcaaat
     1201 tcataagctt caacgagacg atgtctcagc tgtcgtccac gctatcccgc tgcatgaagg
     1261 acatcgtggg cttcgccatc atgttcttca tcatcttctt cgcctacgcc cagttggcgt
     1321 ttctcgtttt tgggtcacag gttgatgact tctccacctt tcaaaattcc atatttgcac
     1381 aatttcgaat tgtcctcggg gactttaact ttgctggcat ccagcaggcc aactggatct
     1441 tggggcccat ctacttcatc accttcatct tcttcgtatt cttcgtgctc ctgaacatgt
     1501 tcttggcaat aattaatgat acctattctg aagtgaaggc cgattattcg ataggcagaa
     1561 gaccagattt tgaacttggt agcataatta agaagagttg cttcaatatt ctggagaaac
     1621 tcagactcag gaaagctcaa aataatgaag acaagaaaat gaaaaccagc gtagacttgg
     1681 cacaagccag aaaagaaggc tttgatgaaa gtgagatcca agaggcaagg cagatgaaaa
     1741 ggtggaagga aaggcttgag aaaaagtatt attctaccga aattcaagac gactaccagc
     1801 ctgtcactca gcaagaattt cgagaactct tcttatatgc ggtggagctt gagaaggagc
     1861 tacactacct gagtttaaaa ctgaaccaag tgatgagaaa gctacactaa ctcgctgacg
     1921 agtaagtcgt tttgtaagaa aaaggcaact gaagaatttc attcagtgtg aagattttcc
     1981 tctcaatttt cttcagtaat aaaaaacaaa aagtaaacaa aaaagccttg tatttccaaa
     2041 gttcttgaag taaaaagaat aaaattcttg tcctttgcta atatatgtac ctgcatgttt
     2101 gctaagtgag gagggatctg cggtaggtaa cgtggctaag tgaggagagg tctgcggtag
     2161 gtaacggggc acagcctttc cttgccctac tgagaccaca aacaaggaca aaatggaatt
     2221 ctctgagtgg ctgacaaagt gaacgcaagg acgagccaag cacacatggt ggaccatcag
     2281 ggaacacaat cactttatga tgtcaacttt caagcaacat attttatatg gattttgaag
     2341 agtcttgttt gctgataaga acttcaagaa gtctaagctt ggctttaatt cttttgtatt
     2401 ccttatattc ctcaaggact ggaacacgat cctccttctg ggcattcctg gggaagataa
     2461 aactctgtaa aat
//
