LOCUS       XM_039098121            8394 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus polycystin 1 like 2 (Pkd1l2), mRNA.
ACCESSION   XM_039098121
VERSION     XM_039098121.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098121.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8394
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8394
                     /gene="Pkd1l2"
                     /note="polycystin 1 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     Proteins, and 94% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:691069"
                     /db_xref="RGD:1588631"
     CDS             873..8351
                     /gene="Pkd1l2"
                     /codon_start=1
                     /product="polycystic kidney disease protein 1-like 2"
                     /protein_id="XP_038954049.1"
                     /db_xref="GeneID:691069"
                     /db_xref="RGD:1588631"
                     /translation="MRERKMDGGWLCGWQHMKDRSPSCSPGSGPRMSMVGLVLLWLTL
                     STGATVAKSEGRGLCSRSQVLFRDTCYEFVPLEHTFHGAQGWCERRGGHLVFIPGEDT
                     QQFLQRHVTQDREWWIGLTGGSAHNGTTGGSGIWLDTSNVNYSNWQEGQAAPAPGACG
                     YIGSGPSSQWAALEDCAQTFAFICEFGVGHSLACEGHNITMHCDSGEAILVQDAFYGR
                     QTPYLCTRGVWPPPDLEGDCGWVSVKDEVAGQCQGLQACQVAADGTYFGDPCPTRGSY
                     LWVQYRCLEGLRLVVPNGNFAFDNVTISLMWLLSPYTGNLSCVLSMGDGYTFDPYYPP
                     SVSSNVTHQFTSPGEFTVFAECTTSEWHVTAQKQVILREKMETPRVTGCSGLSGSGAG
                     LLCQAVFGEPLWVQVDLDGGVGATYAVLSGNRTLAEFTTRRGSQLYNLTLGRDIQELL
                     GPGRHHLKIQDVSTSTASARSGNFTVHFVELLSGLRASWASDRVELGWDLLVNVSVAH
                     GTLEELTFEVAGLNANFSQKEESGGRSSGSYRVAVPAEGTFLVTVHVRNAFSDLSLDI
                     GNVTVTAPSGLREPSGMKAEAENGHKWDMKVFTEPELYVDPFTDVTLGWPDDDLSLDF
                     HWSCGHCWAQWKTCVERQLLHTDQRLLVLHTFCLPPLNSAVTLHLAILRGQELERETE
                     RCLYVSAPLDLGPQISCQKNCRPVKADQDVLLTVTVGDETPVAMFNWYLDDTSPEKAE
                     PLPAACRLRGFWPRSLTLLHSNSSVLLLNSSFLQTWGPVIHIRVTALTDHAYGEDTHV
                     ISMLPPPEVPACVIDPEEGSVLTSFAIFCSTPTAPGPVEYCFCVQSGSCLHCGPEPAL
                     PAVYLPRGEEKDGFVLTVVISVTDQAGDREQTHMAVKVGHDDTGVEDVTFQETVSDRI
                     TTALYHEHGHEELLLLAKAVSSELNKEDQGPGSGRLRMDIKRKVRELVLRSLSTVTTG
                     LENMQRVQALAEALREVTHHSEELTLVAQWEASQALQRNTEALLAAKVHPKDQRRQEA
                     TRAMFEAVGSVLKASLSHGSDEPAEANSSQAHIVAQLLQVVDRLQSALLLGTLPGGLP
                     AILATSSVSVYTDRIQPRSWQGSSVHTTAADSVIFILPATTFLCPTEDSQEPVDIRMM
                     SFSQNPFPSRSHFEVSGTVGGLRLTSSSGRPIPVKNLSQNIEILLPRISTRIKPNTLS
                     LATGDALSVNVTAGDAALGIQLHWGPGVALTLSLGYGYHPNETSYDAQTRLPAVADAG
                     DLPTWILYPEDLPFGEGIYYLRVVPKDDLESTSDRNLTVGITTFLAHCVFWDEAQGTW
                     DNSGCRVGPRTTTSQTHCLCNHLTFFGSTFLVMPNAIDVHQTAELFATFEDNPVVVTT
                     VGCLCMVYVLVVIWARRKDIQDQAKAKVIVLEDNDPFAQYHYLVTVYTGHRRGAATSS
                     KVTLTLYGSDGESEPHHLSDSDAAVFERGGVDVFLLSTLFPLGELQSLRLWHDNSGDR
                     PSWYVSRVLVYDPVVDQKWYFLCNSWLSIDVGDCVLDKVFPVATEQDRKQFSHLFFTK
                     TSTGFQDGHIWYSVFCNSTRSSFTRVQRVSCCFSMLLCTMLTSIMFWGVPKDPAEQKM
                     DLGKIEFTWQEVMIGLESSVLMFPINLLIVQIFRNTRPRLLMEKNGKRKQGSPHPTPL
                     PQPTEEGLLTPETLTKGIQSLISSLFKALKVPPPASGWDSTNQMDINSLLALMEDIVS
                     PESTAGQEFWEEARGREDPLTFTHGSVKPEENTWHLGPRLAVSDLWKDSIYRPCLYIR
                     LEHVERKLRLVGPQGFRHPHSHAQALRQLHVLKGHLWGQPGTPALAYTSTPRASKCPG
                     CLPWWCVLVGWLLVATTSGVAAFFTMLYGLHYGRASSLKWLISMAVSFVESVFITQPL
                     KVLGFAVFFALVLKREDDEETLPLLPGRLSSPGPHVLSQSRRRSSKDAYRPPPAAAIE
                     KMKTARLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHFNRHLERSFTQGFSA
                     VLDFRGFLEWANTTLVKNLYGHHPGFVTDGNSKLVGSAHLRQVRVRESSCAVAWQLRG
                     SFDGCRAPYSLDAEDLADYGEGWNASAHNSSDGFPKVWQYQSQSRRRGYPTWGKLAVY
                     GGGGYVVPLGTDHQSASRILQHLFDNRWLDALTRALFVEFTVYNANVNLLCCVTLTLE
                     TSGLGTFFSHVTLQSLRLYPFTDGWHPFVVVAELVYFLFLFYYMVEQGKLMRKQKWGY
                     FCSKWNLLELAIILASWSALVVFVKRAVLADRDLQHYRKNRGEGVSFSETAAADAALG
                     YIIAFLVLLSTVKLWHLLRLNPKMNMITSALRSAWGDISGFVTVILIMLLAYSIASHL
                     IFGWKLRSYKTLFDAAETMISLQLGIFNYEEVLDYSPVLGSLLIGSCIVFMTFVVLNL
                     FISVILVAFSEEQKSDQLSEEGEIADLLLMKILSFLGIRCKREETWSSSEQPELSPNT
                     LSLQPAQALPGI"
ORIGIN      
        1 agacagacac acacacacat acatgtaggg gtgtaacaac atatttttta aggtgggaaa
       61 tggacagcag aagcctgcag aaaacttgtc ccttcctccc atcttgccat aggattgtgt
      121 gttatgtctt gctagaatct tgctgtgctg agattaaata cgcacgcctc cacatctgga
      181 ctattacaag ggttctgggc ccaaactcag gctcgtgtgg tttgagtttt tacacactga
      241 gtcatctctc cagtctcagg aagtagtttt tgaatcaagc cttgaaggag aagtgggccg
      301 gatggactgg cgtattctct gaagccagac tagacagagc cttgtgtgca aagataaagc
      361 ccttgcgttt tgccacagac cctggacacg ctccagatgg tctgggcgat agctgaggat
      421 gaataggtta taaaacttat ttgatggcac gaaatacatt ttgtggggat gctttatcct
      481 ccggtcagca caatgatggc atgatgtgtc agaaggggac ctgcctgtcc catcagacag
      541 gggaagacag ttatcgcctg ggcgcaggtg gccttccaca caatagaact gcatgtggta
      601 ccactctgta cgcgagccat cccataacta acttctacgc tagttatatc acaagcctcc
      661 cacatgctga ctgcccaaag agaagaagaa gaaaagaata gtaaagaatt tatcaaacag
      721 gtatcatagc aactttatct ttctctagaa gaaatttgaa catgaactgg ttttcagaca
      781 gccattgaac aaagagttgg atgaagccaa aacacagaca cattcaccct gtgcgttttg
      841 tcccataaac aaaagagtga ttatttggtg caatgaggga aaggaagatg gatggcgggt
      901 ggctatgtgg atggcagcat atgaaggacc gatctccatc ctgcagcccc ggcagtggtc
      961 ccaggatgag catggtaggc ttggtgcttc tgtggcttac actgagcact ggggccacgg
     1021 tggctaagtc agaaggacgc ggtctctgct caaggagcca ggtgctcttc agagacactt
     1081 gctatgagtt tgtgccgctg gaacacacct tccacggtgc ccagggctgg tgtgaacggc
     1141 gcggaggtca tctggtcttc attcctggtg aagacaccca gcagttcctg cagagacacg
     1201 ttacccagga cagagaatgg tggatcgggc tcacgggagg ctcggcgcac aacggcacta
     1261 cgggaggctc tgggatctgg ctggacacct cgaatgtgaa ctacagcaac tggcaggaag
     1321 ggcaagccgc gcccgccccg ggggcctgcg gctacatcgg gagtggtcct tcatcccagt
     1381 gggctgccct agaggattgc gcacagacct ttgccttcat ctgcgagttt ggggtcggcc
     1441 acagtctggc ttgtgagggc cacaacatca ccatgcactg cgactcagga gaggccatcc
     1501 tagtccaaga tgctttctat gggcgccaga ccccctattt gtgcacccgg ggcgtctggc
     1561 ctcccccaga cctggaggga gactgtggct gggtcagcgt caaggatgag gtggcaggcc
     1621 agtgtcaggg gctgcaggca tgccaggttg cggcagatgg gacctacttt ggagacccgt
     1681 gccccactag gggcagctac ctgtgggtgc agtaccggtg tctggaaggc ctgcggctgg
     1741 tggtgcccaa cgggaacttc gcctttgaca atgtcaccat ctccctgatg tggctccttt
     1801 ctccctacac tggaaacctg tcctgtgtac tcagcatggg agatggctat acctttgacc
     1861 cctactaccc tcccagtgtg tccagcaatg tgacccacca gttcacctct cccggggagt
     1921 tcacggtgtt tgctgagtgt acgaccagcg agtggcacgt gaccgctcag aagcaagtga
     1981 tcctccgaga gaagatggag acgccccgtg tcactgggtg ctcaggcctg tctggatctg
     2041 gagccggcct cctctgtcag gctgtctttg gggaacccct gtgggttcag gtggatctgg
     2101 atggaggagt cggtgcgact tacgctgtgc tttcgggtaa tagaactctg gctgagttca
     2161 ccacccggag gggctcgcag ctttacaatc tgaccctggg gagagacatc caggagttgc
     2221 tgggccctgg gaggcaccac ctgaagatcc aagatgtcag caccagcact gcctccgccc
     2281 gttctggaaa cttcactgtg cactttgtgg agctgctgtc ggggcttcgg gcctcctggg
     2341 cttctgaccg cgtggagctt gggtgggact tgttggtcaa cgtctcggtg gctcatggta
     2401 ccctggagga gctgaccttc gaggtggcgg gactcaatgc gaacttctcc cagaaggagg
     2461 agagcggtgg gcggtcatct gggagctacc gcgtggctgt tcctgctgaa ggcaccttcc
     2521 tggtcactgt gcacgtgcgg aacgctttct cagacctgag cttggacatt gggaacgtca
     2581 cggtcactgc cccttccggt ctccgagaac cgtctggaat gaaagccgaa gcagagaacg
     2641 gacacaagtg ggacatgaag gtgttcactg agcctgaact gtacgtggac cctttcacag
     2701 acgtcacact gggctggccg gatgatgacc taagcttgga cttccactgg tcctgtggac
     2761 attgctgggc tcagtggaag acctgtgtgg agaggcaact gctccacaca gaccagaggt
     2821 tgctggtact ccataccttc tgtctgccac ctctcaactc tgctgtcacc ctgcatttgg
     2881 ctatcctacg gggccaagaa ctggagagag agacagaacg gtgcctctat gtgtctgctc
     2941 ccctggacct tgggcctcaa atcagctgtc aaaagaactg ccgaccagtg aaagccgacc
     3001 aagatgttct gctcactgtc actgtgggag atgaaacccc agtggccatg ttcaactggt
     3061 acttagatga cacctcacca gagaaggccg agcctctccc agcagcctgc agactcagag
     3121 gattttggcc acgatcactg accctccttc acagcaactc ttctgtgctg ctactgaata
     3181 gcagcttcct gcagacctgg gggcctgtta ttcacatccg ggtcacagca ctgaccgacc
     3241 acgcctacgg ggaggacacc cacgtgatca gcatgctacc tccacctgag gtgcctgcct
     3301 gcgtgattga ccctgaggaa ggttctgtac tgacgagctt cgccatcttc tgcagcaccc
     3361 ccacagctcc gggccctgtg gagtactgct tctgtgtaca gtcaggttcc tgcctccact
     3421 gtggccccga accagccctt cctgctgtgt atctgccacg tggagaagaa aaggatggct
     3481 ttgtcttgac agtggtcatc tccgtcaccg atcaggcagg ggacagagag cagacccaca
     3541 tggcagttaa ggtgggacac gatgacacgg gtgttgaaga tgtgacattt caggagactg
     3601 tgtcagacag aatcaccaca gctctgtacc acgagcatgg ccatgaagag cttctcctgt
     3661 tggccaaggc tgtgtcctct gaactcaaca aggaggacca gggcccaggc tctgggcgac
     3721 tcagaatgga catcaagcgg aaggtcagag agcttgtgct gagatcactg tccacggtca
     3781 ccaccggcct tgaaaacatg cagagggtcc aggctttggc tgaggcgctg agagaggtga
     3841 ctcatcacag tgaggagctc acccttgtgg cccagtggga ggccagccag gctctgcagc
     3901 gtaacactga agccctgttg gcagccaagg ttcatcccaa ggatcagaga cgccaggaag
     3961 ccacgagagc catgttcgag gctgtgggga gtgttctgaa agcttccctc agccacggat
     4021 cagatgagcc tgcagaggcc aacagcagcc aggctcacat tgtggcccag ctgcttcagg
     4081 tggtagaccg tttgcagagt gccctcctgc tggggacatt gccaggaggc cttcccgcca
     4141 tcttggccac ctcctccgtc tctgtgtaca cagacagaat acagccaagg agttggcaag
     4201 gctcttcggt gcacactact gccgcggact ctgtgatctt catcctgcct gccaccacct
     4261 tcctctgccc cacggaggac agccaagagc ctgtggacat aaggatgatg agtttctcac
     4321 agaacccctt cccttcccga agccactttg aagtcagcgg aactgtcggt ggacttcggc
     4381 tgaccagctc cagtggccgt cccatcccag tgaagaacct gtcacagaat atcgagatct
     4441 tgctgccccg gatttcaaca cgcatcaagc caaatacgct gagcttggcc accggtgacg
     4501 ctctgtcagt gaatgtgaca gcaggggatg cagctctggg gatccagctg cactggggac
     4561 ctggagtcgc actcacactc agcctgggct atggctacca tcccaatgag accagctatg
     4621 atgcccaaac acgcctgcct gctgtggccg acgcaggtga tcttcccaca tggatcctat
     4681 acccagagga cctgcccttt ggagaaggaa tctactattt aagggtggtc cccaaggacg
     4741 atctggagtc tacctctgac aggaacctca cagttggcat taccaccttc ctggcacatt
     4801 gtgtcttctg ggatgaagcc caggggacct gggacaactc tgggtgccgg gtgggcccac
     4861 gaaccaccac ctcccagaca cactgccttt gcaaccacct caccttcttc ggaagcacgt
     4921 tcctggtgat gcccaatgcc atcgacgtcc accagactgc cgagctcttc gctacctttg
     4981 aggacaaccc cgtggtggtt accacagtgg gctgcctctg catggtctac gtgctggtag
     5041 tgatctgggc caggagaaaa gacatacagg atcaggccaa ggcaaaagtc atagttctgg
     5101 aggataatga tccctttgcc cagtaccact acctggtgac agtctacacc ggacatcgac
     5161 gaggggcagc cacatcttca aaggtgactc tcaccctata cggctcagat ggagagagtg
     5221 agccccacca cctgtcagac tctgatgctg cagtgtttga gcgaggaggg gtcgatgtct
     5281 tcctgctttc cactctgttc cccctgggag aactgcagag cctcaggctg tggcatgaca
     5341 actctgggga ccggccatca tggtatgtga gtcgggtgct ggtctatgat cctgtggtgg
     5401 accagaaatg gtatttcctc tgcaactcgt ggctgtccat cgatgttgga gactgtgtcc
     5461 tggacaaggt gtttcctgtg gccacagagc aggacaggaa gcagttcagt cacctgtttt
     5521 tcactaaaac ctccacgggc ttccaggatg gacacatctg gtactcagtc ttctgtaact
     5581 ccactcggag cagcttcaca cgtgtgcaga gggtgtcctg ttgcttctcg atgcttctct
     5641 gcaccatgct gaccagcatc atgttctggg gggtccctaa ggacccagct gagcagaaga
     5701 tggacttggg caaaattgag ttcacttggc aggaggtgat gatcgggttg gagagctccg
     5761 ttcttatgtt ccccatcaat ctcctgattg tccagatctt tcggaacacc cgacctcgtc
     5821 tcctgatgga gaagaatggg aaacggaaac agggatcccc tcacccaact cccttaccgc
     5881 agcccacaga ggagggactt ctgacacctg aaacactgac caagggtata cagagtctca
     5941 tcagctcact gtttaaagcc ctgaaggtgc cgcccccagc ctcaggctgg gactctacaa
     6001 accagatgga cattaactcc ctcctcgctt taatggagga catagtctct ccagagagca
     6061 cagcaggaca ggagttctgg gaggaagcca gagggagaga ggaccctctc accttcacac
     6121 atgggtctgt taaaccggaa gagaacacat ggcacctggg gccccggctg gcggtgagcg
     6181 acctttggaa ggacagcatc tacaggccat gtctctacat tcggctggag catgtagaga
     6241 ggaagctgcg actggtgggg ccccaaggct tccggcatcc tcacagccat gcccaggccc
     6301 tcaggcagct acatgtcctg aagggccacc tctggggaca gcctggtacc ccggcactgg
     6361 catataccag cactcctcgg gccagcaaat gccctggctg cctgccctgg tggtgtgtcc
     6421 tagtgggctg gctcctggtg gcgaccacca gtggggtggc agccttcttc accatgctgt
     6481 acggcctgca ctatggaagg gccagctccc tcaagtggct catctccatg gctgtgtcct
     6541 ttgtggagag tgtgttcatc acccagcccc tgaaggtgct gggctttgct gttttctttg
     6601 cgctggtttt gaagagagag gatgatgaag agaccttacc tttacttcca ggacgtctgt
     6661 ctagcccagg tccccatgtc ttgtcccaat cacggaggcg cagcagcaag gatgcttacc
     6721 ggcctcctcc cgctgctgcc attgagaaga tgaaaaccgc acgcctcaag gagcagaaag
     6781 catttgccct catcagagag atcctggctt acctgggctt cctgtggatg ctgctgctgg
     6841 tggcctacgg gcaaagggac cccagtgctt accacttcaa cagacatctg gaacggagct
     6901 tcactcaagg cttttcagct gttttggact tcagagggtt cttagaatgg gccaacacca
     6961 ctcttgtgaa gaacctatat ggtcatcacc caggctttgt cactgacggg aactccaagt
     7021 tggttggcag tgcccacctt cgccaagtaa gggtccgaga aagctcttgc gctgttgcct
     7081 ggcagttacg gggttctttt gatggatgcc gtgcgccata ttccctggat gctgaagacc
     7141 tggcagacta tggagaaggc tggaatgcct ctgcccacaa tagcagcgat ggcttcccta
     7201 aggtgtggca gtaccagagc cagagccgac gccggggtta tcccacatgg ggcaaacttg
     7261 ccgtgtatgg gggaggaggc tatgtggtcc ccttggggac tgatcaccaa agtgcctcaa
     7321 ggattctcca acacctcttt gacaatagat ggctggacgc cctgaccaga gcgctgtttg
     7381 tggagttcac tgtttacaac gccaatgtta atctgttgtg ctgtgtcaca ctcacactgg
     7441 agaccagtgg cctgggtacc ttcttctcac acgtgaccct gcagagccta cgcctgtacc
     7501 ccttcacgga tggctggcac cccttcgtgg tggtggctga gctcgtttat ttcctcttcc
     7561 tcttctacta catggtggag cagggcaagc tcatgaggaa gcagaagtgg ggttactttt
     7621 gcagcaagtg gaatcttctg gagctggcca tcatcctggc cagctggagc gcccttgtgg
     7681 tgtttgtaaa gagagccgtc ttggctgatc gtgacctcca gcactatcgg aagaacaggg
     7741 gcgagggggt cagtttcagc gagacggcag cggctgatgc tgcgcttggt tacatcatcg
     7801 ccttccttgt cctgctgtcc acagtgaagc tttggcacct gctcaggttg aatcccaaaa
     7861 tgaacatgat cacgtcagca ctgcgcagtg cctggggcga catctcaggt tttgtcaccg
     7921 tcattcttat catgctcctg gcttactcca ttgcgtcaca tttaatattt ggttggaaac
     7981 tccgttccta caaaaccctc tttgacgcgg cagaaacaat gatcagcctt cagctgggga
     8041 tcttcaacta tgaagaggtc ctggactaca gcccagttct tggctccctc ctcattgggt
     8101 cctgcatagt ctttatgaca tttgtggtac tgaatctgtt tatctctgtc attctggtgg
     8161 ccttcagcga ggagcaaaag tctgaccagc tctcagagga aggagagatt gcggacttgc
     8221 tcctgatgaa aatcctcagc tttctgggca tcagatgtaa aagggaagag acttggagca
     8281 gcagtgagca gccggagttg tcccctaaca ctctgtccct tcagccagca caagctttgc
     8341 ccgggattta aactgttcat ccacaggtgg cagaggcagg gtgtggggaa tggg
//
