LOCUS       XM_039087319            6583 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PITPNM family member 3 (Pitpnm3),
            transcript variant X1, mRNA.
ACCESSION   XM_039087319
VERSION     XM_039087319.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087319.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6583
                     /gene="Pitpnm3"
                     /note="PITPNM family member 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 14 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 55 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:287467"
                     /db_xref="RGD:1308200"
     CDS             167..3091
                     /gene="Pitpnm3"
                     /codon_start=1
                     /product="membrane-associated phosphatidylinositol
                     transfer protein 3 isoform X1"
                     /protein_id="XP_038943247.1"
                     /db_xref="GeneID:287467"
                     /db_xref="RGD:1308200"
                     /translation="MAKAGSAGGPSPGGGAPWHLRNVLSDSVESSDDEFFDAREEVAE
                     GKNAILIGMSQWSSNDLVEQIETMGKLDEHQGEGATACTSSILQEKQRELYRVSLRRQ
                     KFPAQGSIEIHEDVEEGCSQRSCKTHVLLLVLHGGNVLDTGSGDPSCKAADIHTFSSV
                     LEKVTRAHFPAALGHILIKFVPCPAICSEAFSLVSNLNPYSHDEGCLSTSQDHVPLAA
                     LPLLAISSPQYQDAVATVIERANHIYGEFLKSSDGIGFNGQVCLIGDCVGGLLAFDAI
                     CYSAGPSGDSPGSSSRKGSISSTQDTPVVVEEDCNLASSKRLSKSNIDVSSGVEDEDP
                     KRPLTRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEAPAAGTPQLSEVSLGRFDF
                     DVSDFFLFGSPLGLVLAMRRTVLPGIDGFQMRPACSQVYSFFHCADPSASRLEPLLEP
                     KFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRGSPPLLDAPASPPQA
                     PRSQRPERRLSEGSSHSDSSESSDSLAPMGASRITAKWWGTKRIDYALYCPDVLTAFP
                     TVALPHLFHASYWESTDVVAFILRQVMRYESASVKESTGLDPTALSPANPREKWLRKR
                     TQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMTEPSSGR
                     WVHLDTEITNNSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVV
                     FSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQ
                     HNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKITAAYGSTKDISVYSVLGLPAS
                     QIFIVGRPTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQP
                     EFLRKRNHLRRTMSVQQPDPPATNPKPERAQSQPESDKDHERPLPALSWARGAPKFES
                     VP"
ORIGIN      
        1 gagcgggagg gagcggcgag gcggcggcgg ttgcggtgga ggcggccgag cgagcggggc
       61 gggggcgcgg ggcgcggcgc ccggagagtc cgctccggcc gaaggcgccg gggccgggcc
      121 gggagcgagc agcgccggca gcacagcgga gcccgccgcc cgggacatgg ctaaggcggg
      181 cagcgcaggt ggcccgtccc cgggtggcgg tgccccctgg caccttcgga atgtcctcag
      241 tgattcagtg gagagctcag atgatgaatt ctttgatgct agagaggagg tggctgaagg
      301 aaagaatgcc atccttattg gaatgagcca gtggagctcc aatgacctgg tggagcagat
      361 tgagaccatg gggaagctgg atgagcatca aggagaaggg gccacagcgt gcacgtccag
      421 catcttgcaa gagaagcagc gagaactata tcgggtgtcc cttagaaggc agaagttccc
      481 agcccaagga agcattgaga tccacgaaga tgtcgaggaa ggctgctcac agcgctcctg
      541 caagacacat gtccttctgc tggtgctgca tgggggcaac gtcctggaca ccggctctgg
      601 tgacccttcc tgcaaagcag ccgacattca cactttcagc tctgtgctgg agaaggtcac
      661 gcgcgcccac ttccctgctg ccctgggaca catcctcatc aagttcgtcc cttgtcctgc
      721 catctgctcg gaggctttct cgctcgtctc taacctgaac ccctatagcc acgacgaggg
      781 ctgcctcagt accagccagg accacgttcc cctggctgcc cttcccctgc tggccatctc
      841 ctccccacag taccaggatg ctgttgccac tgtcatcgag cgagccaacc acatctatgg
      901 cgagtttctc aagtcctctg atgggattgg cttcaatggg caggtgtgtc tcatcgggga
      961 ctgtgtgggc ggcctcctgg ctttcgatgc catctgctac agtgcggggc cctcagggga
     1021 cagccctggc agtagcagcc ggaaggggag catcagcagt acccaggaca cccctgtggt
     1081 ggtggaggag gactgcaatc tggccagcag caagcgtctt agcaagagca acatcgatgt
     1141 ctccagtgga gtggaggatg aggaccccaa gaggccattg acccggaaac agagcgactc
     1201 ctccacatat gactgcgagg ctatcaccca gcatcacgcc ttcctctcaa gcatccactc
     1261 cagtgtgctg aaggatgagg ccgaggctcc tgctgctggc acaccccagc tctctgaggt
     1321 cagcctgggt cgctttgact ttgacgtatc tgacttcttc ctcttcggct cacccctggg
     1381 cctggtcctg gccatgcgga ggacagtgct gcctgggata gatggtttcc agatgcgtcc
     1441 tgcctgtagc caggtctaca gcttcttcca ctgtgcagat ccctctgctt cacggcttga
     1501 gccactgctg gagcccaagt tccacctggt gcctcctgtc agcgtgcctc gctaccagag
     1561 attccccctg ggcgacggac agtctctcct gctcgctgat gccctgcaca cccacagccc
     1621 cttattcctg gagggcagct cccggggaag ccccccgctt ctggatgccc ctgcctcgcc
     1681 ccctcaggcc ccaagatccc agcgcccaga acggaggcta agcgaaggca gctcccatag
     1741 cgacagttca gagtcctcgg acagcctggc acctatgggt gcctcccgca tcacagccaa
     1801 gtggtgggga accaagagga ttgactatgc tctgtactgc ccggatgtcc ttaccgcctt
     1861 ccccacagtg gccctgcccc acctcttcca tgccagttac tgggagtcta ctgatgtggt
     1921 tgccttcatc ttgagacagg tgatgcgtta cgagagtgca agtgtgaagg aaagcactgg
     1981 tctggacccc acagctctga gccccgctaa cccccgggag aagtggctgc gaaagcgaac
     2041 ccaggtcaag ttgcggaatg ttaccgcgaa ccaccgtgcc aatgatgtaa ttgctgctga
     2101 agatggcccc caggtcttgg tggggcgctt catgtatggc cctcttgaca tggtagctct
     2161 gactggagag aaggtggaca tcttggtgat gacagagcca tcgtcaggcc gctgggtcca
     2221 cctggacaca gaaatcacca acaacagtgg cagaatcaca tacaatgtgc cccggccccg
     2281 gcgtctgggg gttggtgtct accctgtaaa gatggtggtc aggggtgacc agacctgtgc
     2341 gatgagctac ctcacggtgc tgccccgagg catggaatgt gttgtgttca gcattgatgg
     2401 gtcctttgct gccagtgtgt ctatcatggg aagtgacccc aaggtccggc caggggcagt
     2461 ggatgttgtt cggcactggc aggacctggg ctacatgatc ctttacatca cggggcggcc
     2521 ggacatgcag aagcagcggg tggtgtcgtg gctgtcccag cacaacttcc cacagggcat
     2581 gatcttcttc tcggatggac tggtgcacga cccactaagg cagaaggcca tcttccttcg
     2641 caacctcatg caggagtgtt tcatcaaaat cactgctgcc tacggctcca cgaaagatat
     2701 ctctgtctac agtgtgctgg gcctccctgc ctcccagatc ttcattgtgg gccggcccac
     2761 caagaagtac caaacccagt gccagttcct gagtgaaggc tacgcagcac acctggcggc
     2821 actggaggcc agccaccgct ctcgccctaa gaagaacaac tcgcgcatga tcctgcgcaa
     2881 gggcagcttt gggctgcacg cacagccgga gtttctgcgc aagcgcaacc acctgcgcag
     2941 gaccatgtcg gtgcagcaac ccgacccacc ggccaccaac cccaagcccg agcgggctca
     3001 gagccagccc gagtctgaca aggaccacga gcggcctctg cctgctctca gctgggcgcg
     3061 tggggccccc aagttcgagt cggtgccctg aagggtgggc ggtgctcggt acagtgggcg
     3121 cagctaggcg gcctgcaggg atgggaaggg ttgccttctc cgacacaggc gttttcctgc
     3181 tttttccctc ccgtgtctgt ccagcagtgt ccgaccagag cagggaggga ccttgccctg
     3241 acattgggga gctctctggg ctgcgatggg gtgaaatccg gggtgtctca gtgaagccgc
     3301 cgccgcctcc ccactcctgt gcccacaagc tggagtcagg cgtaatgtgt gtgtgtgatc
     3361 ctggggccaa gcctgcctgt gccagtgttt gggtaaagtt gaccatctat ttgagtgctg
     3421 aggtttctgt agcctcccta ggcaggctct aacatgagaa gcctccctca ctgggcactc
     3481 ggccaggcag gtggccgatt gcaggtacag taactgtctg tagaggagta agtggcattt
     3541 atgcctgccc tccttgtgac atccggggca ccactttggg gctggctgtc ttatgacaca
     3601 gagatatcag tttatgggag aagatattcc ctgggtccaa tctatgtatg tggagtttgt
     3661 ccacaaccct ggggaccggg cctggtgctg actgtcttgc agctgtcttt tgtctccttt
     3721 cttgttctcg gtatccttat tctcccgtgg cccttgaaga cagacagtcc tcttccccga
     3781 gtcttgcctt gtgcagctgt gaactcagcc ccaacttggt ctggctgtgt gccctggagt
     3841 ctgtagcata cctactcttt gggccccgcc ttttatttct gtaactagag gcggctgaga
     3901 tgggtactgg gtttgactcc taggctgtct agcatttctg ctctctaggg cttttcagag
     3961 cacccagtgg gcctcctcct cctcctccca tccctcccca tcctgggaga gggtttctgg
     4021 ggatggagct gaaagggagt ccaacacttc ataggaagga agccgctgct tcatggagaa
     4081 caagctggtt tgtgtaacac agagggaaac agaaaggcga caacatggct gccgttccca
     4141 tagctctgtt caggctcaca tttcccttta ggtttctgga acgaacagag ttgagatctt
     4201 gagttccaga ggttcatgga atattggctc aaaccattgt attctcttcc tctccctggc
     4261 cactcagttt ggtttgagcc tagaaccttc tctagggcag gtagaccccc ttagcgtggt
     4321 ggcggagggg tgtctccttg tgcccctggc cttgccacag gcctcccctt gctccctggc
     4381 ctgggctgat acctgctgca tggcctgggt gtcttggggc cctctgagct gcaactgagg
     4441 ccagggccaa atacctgtgt acactgcagg cacatgtcag cccagtgttg cttctgctca
     4501 atgtctacct cttgcagctc ccatgcagcc cgaggtggct gccgatgggg gtggctggca
     4561 ccatgttgtg agttgcccag caacctgggt gcctcactgg ggctggaagg gggtgcggtc
     4621 tcccagtagc caccctgctc tctccactca aatgtgttct ccagcctgcc agctcctgtt
     4681 ccctttgcca gctctccact gcaccatcag cactgcattc agcaaactaa actcagcact
     4741 gccagggggc tgcagagcag gcaagaaggc gtgggaacag cttctgcttc ccccttctat
     4801 cctgcctcct aggagttcat acctgctccc tgcccctcaa atcctccttg cctaccttgc
     4861 accagcccat agggtataga cacctcagtc cttttcctta aatgctgtgg tttgagtttg
     4921 agcaaacctg attgattctc tcacagccct cctctcggca ggagccaccg agtctaactt
     4981 tcaaataaat attcagcccc ttccttttct gagaacccca ggctgaatgc atgtgcgagt
     5041 ggggaacccc cagggagcct gtagcctgtg acagggctct gtgtgggccg gagccggcca
     5101 gaggccccac ccctcctttg cttggatgac cccttttgtg agatatcgct ggcgtacaga
     5161 cgtacatctg ggtgttgtga ccaccgcact aggagctctg gctggtctgt gaggcatgct
     5221 tcctggcaac cactctgtga gtgactccca ctagtgcttt tgttcagtta agtaagagac
     5281 aaaaggaact gattcctagt gttctcccgg aggagggctc gtgtctcctc caggatctgt
     5341 gaccctccat ccagctgttt tctagttacc tctagctcct ggtgtgcctg cagtccagct
     5401 gctggaaacg tgttcctgct tgaccaaagc tcccgtatct gagtggcatg tttgttcttc
     5461 ccgtgtggtg gctgtcctga cttggctgag ggatgcctgc taacttcctt tatcccttgt
     5521 cctgttgtgt gttgctggag ttcgctcttc cggcttcaca tcccgtaccc caaagaccga
     5581 cccctccctg aagcaccacg agatattttt taaagagtaa attattttca tgcatccaga
     5641 caaacagcct tcctgcctgg gtgctgggct acaacatatg tatctgaacc ccggtatccc
     5701 tgagattcct ggggtgctcc tctgaatgag gggaggctgt atctaatggt ttttaaactg
     5761 tactttgcaa cccagagctg tgtcccggaa gtgtcctgca gacaaaacat ggcacctatt
     5821 gaagactgga tcctgccaga ccggtgcccc caagtctgga ggaggtgcca ctcttgcagg
     5881 ctcagattcg gctcaggtga agccccacct gggaggggca ccctgactgt aggagctttg
     5941 cagttgaccc cgccttaaac aaccaacttc ccagtggaat tcccagggtt ccattccaag
     6001 tgctctggaa aaaaaaaaat ccccttttct tttcttctgg gcttgggagg aatttcttct
     6061 acacccaagt taaacattta gtacaagtat caaggctccg ttgagttctg atcttgttgg
     6121 gaaactaaca ggaaggttgg gaagaaaaaa aaaaatcaga gtttgactct acactctgga
     6181 agagatgggg gacaccagga gcgggaggcc aggagggtgg ctagcgtgag acattccccc
     6241 tcagactcag acccactgtc cttttctctt tgtttactca gtggtggcag ccggtctgac
     6301 cttgtctaag gtctgcctgt ccctgtgtgt aacttccagt cctctctgtg atggatggtt
     6361 tgtgatagaa aaggcttatt ttagtcctca tggctgcctt gtacaaaatc cgttagaaaa
     6421 gaaaatgtaa aatatccgat ttctaacaag acaaaaaaac aaaacaaaac aaaaaacagc
     6481 attatggagt taaaagattt ttacatttgg tcttgatttt gatgtgagct gtttttaact
     6541 ctgaaatgtc acttaaataa aaaaaaacct tatttgcctt taa
//
