LOCUS       NM_001377107            2199 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus phosphatidylserine decarboxylase (Pisd),
            transcript variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001377107 XM_001061408 XM_002725000
VERSION     NM_001377107.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Jan 12, 2022 this sequence version replaced NM_001377107.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.2260577.1,
                                           SRR26643292.52344.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JAXUCZ010000014.1  82166443-82166520
            79-158              JAXUCZ010000014.1  82179887-82179966
            159-334             JAXUCZ010000014.1  82188947-82189122
            335-571             JAXUCZ010000014.1  82212481-82212717
            572-710             JAXUCZ010000014.1  82212925-82213063
            711-857             JAXUCZ010000014.1  82213235-82213381
            858-1018            JAXUCZ010000014.1  82213630-82213790
            1019-2199           JAXUCZ010000014.1  82214299-82215479
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..2199
                     /gene="Pisd"
                     /note="phosphatidylserine decarboxylase"
                     /db_xref="GeneID:681361"
                     /db_xref="RGD:1596729"
     exon            1..78
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..1243
                     /gene="Pisd"
                     /EC_number="4.1.1.65"
                     /note="isoform 1 is encoded by transcript variant 1;
                     phosphatidylserine decarboxylase proenzyme, mitochondrial"
                     /codon_start=1
                     /product="phosphatidylserine decarboxylase proenzyme,
                     mitochondrial isoform 1"
                     /protein_id="NP_001364036.1"
                     /db_xref="GeneID:681361"
                     /db_xref="RGD:1596729"
                     /translation="MAVAGGRGCVRSLREGVLWRSSPCHCDYTATRHFLGALQKLPLQ
                     ACNTGVRKVHTAPLRTLFLLRPVPILLAAGGGYAGYRQYEKYRERQLEKLGLEIPPKL
                     ASHWEVSLYKSVPTRLLSRACGRLNQVELPSWLRRPVYSLYIWTFGVNMTEAAVEDLQ
                     HYRNLSEFFRRKLKPQARPVCGLHSVISPSDGKILTFGQVKNSEVEQVKGVTYSLESF
                     LGPRACTEDLPFPPASSCDSFRNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSH
                     RRHFPGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFSLTAVGATNVGSIRIHFD
                     QDLHTNSPSYSKGSYNDLSFVTHANKEGIPMRKGEPLGEFNLGSTIVLIFEAPKDFNF
                     RLKAGQKILFGEALGSL"
     exon            79..158
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            159..334
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            335..571
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            572..710
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            711..857
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1018
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..2199
                     /gene="Pisd"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaggaggc gagatggcgg tggctggggg ccgcgggtgt gttcgctcgc tacgtgaagg
       61 tgtgctgtgg cggagcagcc cctgtcactg tgactatact gccacacgcc attttctggg
      121 ggccttacag aagctgcctc ttcaagcctg taacacaggg gtccgaaaag tccataccgc
      181 tcctctgcga accctgttcc tgctccgccc cgtgcccatc ctgttggcag cagggggcgg
      241 gtatgctggg taccggcagt acgagaagta cagggagcgg cagctcgaga agctggggtt
      301 ggagatcccg cccaagcttg ctagtcactg ggaggtgtcc ctgtataagt ctgtgccaac
      361 acgtttgctg tcacgtgcct gtggtcgcct caaccaggta gaacttcctt cctggctccg
      421 gaggccagtc tacagcctgt atatctggac cttcggggtg aacatgacgg aggctgctgt
      481 ggaggacctg cagcactacc gaaacctcag cgagttcttc cggcgtaagc tgaagcctca
      541 ggctcggcct gtctgtggct tgcacagtgt gatcagccca tcagatggca agatcctcac
      601 ctttgggcag gtgaagaact ctgaggtgga gcaagtaaag ggtgtgacct actccttgga
      661 gtcattcctg ggcccccgag cctgtacaga ggacctgccc ttccctccag cctcctcctg
      721 tgactccttc agaaaccagc tggtcacccg ggaagggaat gagctctacc actgtgtcat
      781 ctacctggcc ccaggagact accactgctt tcactccccc actgactgga ctgtctcaca
      841 tcggcgccac ttcccaggtt ccctgatgtc agtgaaccct ggcatggccc ggtggatcaa
      901 agagctcttc tgtcacaatg agcgtgtagt cctaactgga gactggaaac atgggttctt
      961 ctcattgaca gcagtgggag ccaccaatgt gggctctatc cgcatccact ttgaccaaga
     1021 cctgcacaca aacagcccca gttacagcaa gggttcctac aatgacttga gctttgtaac
     1081 acatgccaac aaggagggca ttcccatgcg caagggtgag ccccttggcg agttcaactt
     1141 gggctccacc attgtactca tctttgaggc acctaaggac ttcaacttca ggctgaaggc
     1201 agggcagaag atcctctttg gggaagcact gggctccctc tagtcctctt ggttgtggct
     1261 gccaagggat ctttccacac aagagcatga gggtcttcag tggagcccca ggcactgcgg
     1321 gactgacctt ctcggacctg aatgatgtgt ccctgcctgt ctagaagtgc agaggagagg
     1381 ttctgggtct gtcaggacct aggcccttta cagagtgtgg gtaggtgtga ttgaccccag
     1441 aatcactctg aggtgtgttt taaaattgtg tggaagccag aggcttcccc ctcctgaact
     1501 cctggcagtg tattgtgaga acggttatgt actgccacac cctctagcta ccccacctgt
     1561 ctcagggcct tctgctcact ctggcttctc tgcctcccct cactatgcac agggtgaggt
     1621 gcctcctgga cacagactgt ggatccagtg tcttcctaga gcaagccaca tggccttcat
     1681 aactgctttc tgttcccaaa ttcctcctgt ctgcctgctg gaaaagtaaa agcatttatg
     1741 tattgctaaa tgtgtatatc ctggactctg ccagtgtctt ctgaggacgg tgactaatga
     1801 tgtagacctt tgtagacctc aagaagctgg ctgaatcctt ttgctacctg gtaggcaaga
     1861 ccaattactg gcttgcctgg taaagtctgg acaggtggag gcccagccct gcagaagtag
     1921 ggcatgctgc tattggtcta gggactgtgt tgaaggcaga gggtatggtg gtcagtgcct
     1981 ggaaaacagt tatatgggcc atggggaacc cagtagtacg gacaagacca gagctcatga
     2041 tgatcttggg aatgccatga atttctccac acagggagaa atcatttaac ttttcaactg
     2101 tatcagtaat acagtatttt gtatgaaaaa taaggagact tctgaacagt aattcattta
     2161 attgcaagac attttgagat taaacaaaaa actattgta
//
