LOCUS       XM_039090724            2740 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired Ig-like receptor B (Pirb),
            transcript variant X2, mRNA.
ACCESSION   XM_039090724
VERSION     XM_039090724.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2740
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2740
                     /gene="Pirb"
                     /gene_synonym="Lilrb3a; Lilrb3b; Lilrb3l; Pir-A1"
                     /note="paired Ig-like receptor B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 54 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 53 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:683463"
                     /db_xref="RGD:1589827"
     CDS             97..2610
                     /gene="Pirb"
                     /gene_synonym="Lilrb3a; Lilrb3b; Lilrb3l; Pir-A1"
                     /codon_start=1
                     /product="leukocyte immunoglobulin-like receptor subfamily
                     B member 3A isoform X2"
                     /protein_id="XP_038946652.1"
                     /db_xref="GeneID:683463"
                     /db_xref="RGD:1589827"
                     /translation="MTFTFTALLCLGLTLGLWIPVLTGSLPKPILRVQPDSVVSMGTT
                     VTFICEETIGAKQSYLYRNGNLQRRVPKNNQKPTNKTEFLFLNVGHQNAGQYHCSYKS
                     QGKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSHYGHTLILTVEGP
                     QKLSWRQDPQCNYYTENCHVLFYVGPLTSNQRWIFRCYSYETNTPQVWSAPSEPVEIL
                     VSGKLQKPTIKAEPGSVIHSGKAMIIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGN
                     KAKLFIRPVTQGHAGDYRCYYYSSAGWSEPSDTLELVVTGIYNYHPLMLSGPPSPVVP
                     EGGNVTLHCTSHRYYDKFILIKEDQKFSSSLDTKYISSTGQHQALFVMGPMTPNYSGT
                     FRCYGYYKHTPQLWSEPSNLLKILITGLSKKPSLLSQQGYFLAPGISLTLQCYSDINY
                     GTFALYKVGEADIIQSSSQWTKDGLSMANFTLSHSTGGQYRCYGAHNLSSEWSASSDP
                     LDILITGQLHHVLFLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKS
                     KIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLLSFASAPVELIVSGPIRTSDLP
                     PTMSIPPDGLQRYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDAQKGKELQLST
                     GAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYA
                     QVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTL
                     RQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ"
ORIGIN      
        1 gtactgcttc cagggccaca ccctgtttcc aatcccttca gaaaggctct gtagctctgc
       61 tctccagcag agttgcaacc tctgagagga gatgccatga ccttcacctt tacagccctg
      121 ctctgtcttg gactgactct gggcctctgg atcccagtgc tgacagggtc cctccctaag
      181 cctatcctca gagtacagcc agattctgtg gtctcaatgg gaactacggt gaccttcatt
      241 tgtgaggaga ccattggagc caaacagtct tatctctata gaaatggaaa cctacagaga
      301 agagttccaa agaacaatca gaagccaaca aacaagactg aattcttatt tttaaatgta
      361 ggccatcaaa atgcagggca atatcactgt tcctacaagt ctcagggtaa atcatcagac
      421 tacagtgagc ccctggagct agtggtcaca ggagcctact cgaaacccag cctttcagcc
      481 cagaccaatc ctgtggtgac ctcaggaggg tatgtcaccc tcaaatgtga gccctcgcat
      541 tacggtcaca cattgattct tactgtagaa ggacctcaga agctctcctg gaggcaggac
      601 ccacagtgta actactatac tgagaattgt catgtcctgt tctatgtggg tccattgacc
      661 tccaaccaga ggtggatatt cagatgctac agctatgaaa caaacacacc acaagtgtgg
      721 tcagctccta gtgaaccagt ggagatcctg gtgtcaggga aactccaaaa accaaccatc
      781 aaggctgaac caggctctgt gatccactct ggaaaggcca tgatcatatg gtgtcagggg
      841 gacctggatg cagaaatata ttttctgcat aaggagggaa gccacaatac acagagcaca
      901 cagaccctac aacagcctgg gaacaaggcc aagttattca tccgtcctgt gacacaaggc
      961 catgcagggg actatcgctg ttactattac agctcggctg gttggtcaga acccagtgac
     1021 accctggagc tggtggtgac aggaatatac aactaccatc cactcatgct gtcaggaccg
     1081 cccagccctg tggtgccaga gggagggaac gtgacactcc actgtacctc acaccgctac
     1141 tatgataaat tcattctcat caaggaagat cagaagttca gcagctcact agacacaaag
     1201 tatatatctt ctactggaca acaccaagct ctgtttgtta tgggacctat gactccaaac
     1261 tactcaggga cattcagatg ctatggttac tacaagcata ccccacagtt gtggtcagaa
     1321 cccagtaacc tcttaaaaat actcatcaca gggctgtcca aaaaaccctc tctgctaagt
     1381 cagcaaggct atttcctggc ccctggaatc agcctcacac tgcagtgtta ctctgacatc
     1441 aactatggca cctttgctct gtacaaagtc ggggaagcag acatcataca gtcctctagc
     1501 cagtggacca aggatggcct ctccatggcc aacttcacac tgagccactc cactggaggc
     1561 cagtacagat gctatggtgc acataacctc tcctctgagt ggtcagcctc cagtgacccc
     1621 ctggacatcc tgatcacagg acagcttcat cacgttcttt tcctctcagt gatgcccaac
     1681 tccacagtac actcaggaga gaatgtgacc ctgatgtgtt ggtcaacgta ctctgtggac
     1741 actttcattc tgtccaagga gggatcaggc cagccacccc ttcgactaaa gtcaaagatc
     1801 caagatcaac agtaccagtc agaattctcc atgagtggtg tgacatccaa gctctcaggc
     1861 acctacaggt gctatggctc tcacgactca tctctctacc tgctgtcatt tgccagtgcc
     1921 cctgtggagc tcatagtctc aggacccatc agaacctctg acctgccacc cacaatgtcc
     1981 ataccaccag atggactgca aaggtacctg aaggctctga ttggagtgtc cgtggccttc
     2041 ctcctgttcc tcttcatcct catcttcatt cttctcagac gaagacatca ggaaaaattc
     2101 aggaaggatg cccagaaagg gaaagaatta caactttcta caggagctgc agagccagta
     2161 accagggaca gaggccacca gaagaggtca aacccagctg ctgccaccca ggaagaaagc
     2221 ctttatgctt cagtggagga catggaaact aaggatggtg tggagctgga cacttggaaa
     2281 ccacctgagg gagatcccca aggagagaca tatgcccagg tggaaccatc caggctcagg
     2341 agggcgggag ctatctcacc tgtcgtatca agggagcagc tgaacacaaa atatgaacaa
     2401 gcagaagagg gccaagaggt ggacagtcag gctactgaat ctgaagagcc tcaggatgtg
     2461 acctatgccc agctgtgcag caggacactc agacagggga cagctgcacc tcctctctcc
     2521 caggcagggg aagccccaga ggagcccagt gtatatgctg ctctagcgac tgctcgcccg
     2581 ggagctgttc ctaagaacaa gaagcagtga cactccagtg atcctggtag cctgccagga
     2641 tgcctaccag agacctccaa gagactctgg gaacttttgg aaacctgact gcactaagta
     2701 atgtaaccgt ttggaaataa aggcagatat ttctcaataa
//
