LOCUS       XM_006228070            2463 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired Ig-like receptor B (Pirb),
            transcript variant X6, mRNA.
ACCESSION   XM_006228070
VERSION     XM_006228070.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006228070.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006228070.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2463
                     /gene="Pirb"
                     /gene_synonym="Lilrb3a; Lilrb3b; Lilrb3l; Pir-A1"
                     /note="paired Ig-like receptor B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 32 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 41 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:683463"
                     /db_xref="RGD:1589827"
     CDS             96..2333
                     /gene="Pirb"
                     /gene_synonym="Lilrb3a; Lilrb3b; Lilrb3l; Pir-A1"
                     /codon_start=1
                     /product="leukocyte immunoglobulin-like receptor subfamily
                     B member 3A isoform X6"
                     /protein_id="XP_006228132.1"
                     /db_xref="GeneID:683463"
                     /db_xref="RGD:1589827"
                     /translation="MTFTFTALLCLGLTLGLWIPVLTGAYSKPSLSAQTNPVVTSGGY
                     VTLKCEPSHYGHTLILTVEGPQKLSWRQDPQCNYYTENCHVLFYVGPLTSNQRWIFRC
                     YSYETNTPQVWSAPSEPVEILVSGKLQKPTIKAEPGSVIHSGKAMIIWCQGDLDAEIY
                     FLHKEGSHNTQSTQTLQQPGNKAKLFIRPVTQGHAGDYRCYYYSSAGWSEPSDTLELV
                     VTGIYNYHPLMLSGPPSPVVPEGGNVTLHCTSHRYYDKFILIKEDQKFSSSLDTKYIS
                     STGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSEPSNLLKILITGLSKKPSLLSQ
                     QGYFLAPGISLTLQCYSDINYGTFALYKVGEADIIQSSSQWTKDGLSMANFTLSHSTG
                     GQYRCYGAHNLSSEWSASSDPLDILITGQLHHVLFLSVMPNSTVHSGENVTLMCWSTY
                     SVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLL
                     SFASAPVELIVSGPIRTSDLPPTMSIPPDGLQRYLKALIGVSVAFLLFLFILIFILLR
                     RRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDM
                     ETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQE
                     VDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVP
                     KNKKQ"
ORIGIN      
        1 tactgcttcc agggccacac cctgtttcca atcccttcag aaaggctctg tagctctgct
       61 ctccagcaga gttgcaacct ctgagaggag atgccatgac cttcaccttt acagccctgc
      121 tctgtcttgg actgactctg ggcctctgga tcccagtgct gacaggagcc tactcgaaac
      181 ccagcctttc agcccagacc aatcctgtgg tgacctcagg agggtatgtc accctcaaat
      241 gtgagccctc gcattacggt cacacattga ttcttactgt agaaggacct cagaagctct
      301 cctggaggca ggacccacag tgtaactact atactgagaa ttgtcatgtc ctgttctatg
      361 tgggtccatt gacctccaac cagaggtgga tattcagatg ctacagctat gaaacaaaca
      421 caccacaagt gtggtcagct cctagtgaac cagtggagat cctggtgtca gggaaactcc
      481 aaaaaccaac catcaaggct gaaccaggct ctgtgatcca ctctggaaag gccatgatca
      541 tatggtgtca gggggacctg gatgcagaaa tatattttct gcataaggag ggaagccaca
      601 atacacagag cacacagacc ctacaacagc ctgggaacaa ggccaagtta ttcatccgtc
      661 ctgtgacaca aggccatgca ggggactatc gctgttacta ttacagctcg gctggttggt
      721 cagaacccag tgacaccctg gagctggtgg tgacaggaat atacaactac catccactca
      781 tgctgtcagg accgcccagc cctgtggtgc cagagggagg gaacgtgaca ctccactgta
      841 cctcacaccg ctactatgat aaattcattc tcatcaagga agatcagaag ttcagcagct
      901 cactagacac aaagtatata tcttctactg gacaacacca agctctgttt gttatgggac
      961 ctatgactcc aaactactca gggacattca gatgctatgg ttactacaag cataccccac
     1021 agttgtggtc agaacccagt aacctcttaa aaatactcat cacagggctg tccaaaaaac
     1081 cctctctgct aagtcagcaa ggctatttcc tggcccctgg aatcagcctc acactgcagt
     1141 gttactctga catcaactat ggcacctttg ctctgtacaa agtcggggaa gcagacatca
     1201 tacagtcctc tagccagtgg accaaggatg gcctctccat ggccaacttc acactgagcc
     1261 actccactgg aggccagtac agatgctatg gtgcacataa cctctcctct gagtggtcag
     1321 cctccagtga ccccctggac atcctgatca caggacagct tcatcacgtt cttttcctct
     1381 cagtgatgcc caactccaca gtacactcag gagagaatgt gaccctgatg tgttggtcaa
     1441 cgtactctgt ggacactttc attctgtcca aggagggatc aggccagcca ccccttcgac
     1501 taaagtcaaa gatccaagat caacagtacc agtcagaatt ctccatgagt ggtgtgacat
     1561 ccaagctctc aggcacctac aggtgctatg gctctcacga ctcatctctc tacctgctgt
     1621 catttgccag tgcccctgtg gagctcatag tctcaggacc catcagaacc tctgacctgc
     1681 cacccacaat gtccatacca ccagatggac tgcaaaggta cctgaaggct ctgattggag
     1741 tgtccgtggc cttcctcctg ttcctcttca tcctcatctt cattcttctc agacgaagac
     1801 atcaggaaaa attcaggaag gatgatgagg atgcccagaa agggaaagaa ttacaacttt
     1861 ctacaggagc tgcagagcca gtaaccaggg acagaggcca ccagaagagg tcaaacccag
     1921 ctgctgccac ccaggaagaa agcctttatg cttcagtgga ggacatggaa actaaggatg
     1981 gtgtggagct ggacacttgg aaaccacctg agggagatcc ccaaggagag acatatgccc
     2041 aggtggaacc atccaggctc aggagggcgg gagctatctc acctgtcgta tcaagggagc
     2101 agctgaacac aaaatatgaa caagcagaag agggccaaga ggtggacagt caggctactg
     2161 aatctgaaga gcctcaggat gtgacctatg cccagctgtg cagcaggaca ctcagacagg
     2221 ggacagctgc acctcctctc tcccaggcag gggaagcccc agaggagccc agtgtatatg
     2281 ctgctctagc gactgctcgc ccgggagctg ttcctaagaa caagaagcag tgacactcca
     2341 gtgatcctgg tagcctgcca ggatgcctac cagagacctc caagagactc tgggaacttt
     2401 tggaaacctg actgcactaa gtaatgtaac cgtttggaaa taaaggcaga tatttctcaa
     2461 taa
//
