LOCUS       XM_039100350            4049 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired-Ig-like receptor A12 (Pira12),
            mRNA.
ACCESSION   XM_039100350
VERSION     XM_039100350.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4049
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4049
                     /gene="Pira12"
                     /note="paired-Ig-like receptor A12; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 67
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:502291"
                     /db_xref="RGD:1562625"
     CDS             88..2082
                     /gene="Pira12"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:886..888,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: leukocyte
                     immunoglobulin-like receptor subfamily B member 3"
                     /protein_id="XP_038956278.1"
                     /db_xref="GeneID:502291"
                     /db_xref="RGD:1562625"
                     /translation="MTFTCKALLCLGMTLGLWITVLTEFLPRPILRVQPDTVVSTQSK
                     VIFFCERSQGAELYCLYKKGNPRNPRCKEIRPKPGKKVEFSISKIDPYHAGHYHCYYQ
                     IHGQWSEDSDALELVVTGAHSKPRLSTQPSPVVSSVQKVTLQCVSGQNYDRFILTKEG
                     PQELLWRQDSQYNYDTGISQAFFSVPPVTSSQRWAFRCYSYDSSNPQVWSEPSETLEL
                     LVSGNLPKPIIKVEPGSVVTLTSSMTIWCQGTLDTEVYFLYNEGSHSTXSTETLQKPG
                     NKGKFFYPSVTGEHAGKYCCYWYSSAGWSEPSDTLELVVTGIYDYNELRLSVLPSPVV
                     TVGRNMTLHCVSHSHYDKFILTKEDHKFTSSLDTQCIPPSGQCQALFVMGPMTSNHTG
                     TFRCYGYYKHTPQLWSIPSEPLEIHISGLSKKPSLLTHQGHILDPGVNLTLQCCSDIN
                     YDRFALYKVGGADIMQHTSQCTDTGFSMTNFTLGYVNHSTGGQYRCYGAHDLSSEWSA
                     SSDPLDILITGQRHHAPSLSVMPNSTVHSGENVTLLCWSMYFVDTFILSKEGSGQPPL
                     RLKSKFQDQQYQSEFSMSAVTSTHSGTYRCYGSLDSALYLLSFASAPVELIVSAPENR
                     DHTMENLIRMGMAVLVLIVLSILAAEAWHSHRQTHHADGK"
ORIGIN      
        1 ccagggccac accctcttcc caaacccttc agaaaggctc tgtatctctg ttctcaagca
       61 gagttgcagc ctctgagagg agatgcgatg accttcacct gcaaagccct gctctgtctt
      121 ggaatgactc tgggcctctg gatcacagtg ctgacagagt tcctccctag gccaatcctt
      181 agagtacagc cagacactgt ggtctctaca cagagtaagg tgatcttctt ctgtgagagg
      241 agtcaaggag ccgaacttta ttgtctctat aaaaagggaa atccacgaaa tccacggtgc
      301 aaagaaattc gacctaaacc tggcaagaag gttgaattct ccatctcaaa aattgacccg
      361 taccatgcag gacattacca ctgttattat cagatccatg gtcaatggtc agaggacagt
      421 gatgcgctgg aactggtagt gacaggagca cacagtaaac ccaggctgtc aacccaaccc
      481 agccctgtgg tgagctcagt acagaaggtg accctccagt gtgtgtcagg gcagaattat
      541 gacaggttca ttctgactaa ggaaggacca caggagctcc tctggaggca ggactcacag
      601 tataactatg atactgggat ttctcaggcc ttcttttctg taccaccagt gacctccagc
      661 cagaggtggg cattcagatg ctacagctat gacagtagca atccacaggt gtggtcagaa
      721 cctagtgaaa ccctggagct cctggtctcg gggaacctac ccaaacccat catcaaggtt
      781 gaaccaggct ctgtggtcac tctaactagt tccatgacca tctggtgtca gggtaccctg
      841 gatacagaag tgtattttct gtataatgaa gggagccatt caacctgaag cacagagact
      901 ctacaaaagc ctgggaacaa gggcaagttc ttttaccctt ctgtgacagg agaacatgca
      961 gggaaatatt gttgttattg gtacagctca gctggttggt cagagcccag tgacaccctg
     1021 gagctggtgg tgacaggaat ctatgactac aatgaactca ggctgtcagt actgcccagc
     1081 cctgtggtga cagtgggaag gaacatgaca ctgcactgtg tctcacatag tcactatgat
     1141 aaattcattc tcaccaagga agatcacaag ttcaccagct cactggacac acagtgtata
     1201 cctcctagtg gacagtgcca agctctgttt gttatgggac ccatgacatc aaaccacacc
     1261 gggacattcc gatgttatgg ttactacaag catactccac agttgtggtc aatacccagt
     1321 gagcccctgg aaattcatat ctcagggctg tccaagaagc cctctctgct aactcaccaa
     1381 ggacacatcc tggaccctgg agttaacctc acactgcagt gttgctctga catcaactat
     1441 gacagatttg ctctgtacaa agttgggggt gctgacatta tgcagcacac tagccagtgt
     1501 actgacactg gcttctccat gaccaacttc acactgggct atgtaaacca ctctactgga
     1561 ggccaataca gatgctatgg tgcacacgac ctctcctctg agtggtcagc atccagtgat
     1621 cccctggaca tcctgatcac aggacaacgt catcatgcac cttccctctc agtgatgccc
     1681 aactccacag tacactcagg agagaatgtg accctgctgt gttggtcaat gtactttgtg
     1741 gacactttca ttctgtccaa ggagggatca ggccagccac cccttcgact aaaatcaaag
     1801 tttcaagatc agcagtacca gtcagaattc tccatgagtg ctgtgacctc cacccactcg
     1861 ggcacctaca ggtgctatgg ttctctcgac tcagctctct acctgttgtc atttgccagt
     1921 gcccctgtgg agctcatagt ctcagctcca gagaaccggg atcacacaat ggagaatctc
     1981 atcaggatgg gaatggctgt cctggtcctc atagtccttt cgattctagc cgctgaggcc
     2041 tggcatagcc atagacagac ccaccatgca gatgggaaat aatctaaaga gaaatcagga
     2101 catctttcaa agttctacac tctgggaaat aaatctgatg atccaaaatt ttgtcagaaa
     2161 aaatgtgtta atagaatgtc cagggagcaa aagtatttgg ggttcaggag aaagaagact
     2221 tctgatgagg tgcttccttg gtaaacaaat tattgttcct cacatgctgg gggcctttgc
     2281 ttcctgaacc ccctcctttt ttctttgtcg ttattagttg aatcagaact gtggctggct
     2341 cctgagtagc agcctctttt ttttcatttt atctgcaaag ttatttcccc tgtgaaagtc
     2401 tcttcatttt ggtgtccttg gaaatggatg acactctcgt ttagtggttt aaggagagcc
     2461 tctaagagtg tcttgatctc ggatgtgttc ttaattgttt gccgttggac gtcaggagcc
     2521 ccatctactg aattattgcc gcttgtatat gagtgatgcc agtgcatacc tgctttgagt
     2581 gtagttgttg attaactttc cagctcccag ttctaaggac ttggtgaaag agatttgttc
     2641 tgctttctgg tctgaagttc cagacggcaa tggttctgcc aagagcactt gtcacctgtc
     2701 taccacagcc attccagcct tgcactgccc atctagggga tagctgctgc tgtcagtgaa
     2761 ccaagtaacc tgagtctcag acagtgtctg gtcaagagat ctttcctcca cccctgtttc
     2821 tctgccaggt cctgcgaaca gtcatgggca tgtacctgag catcagggtc aggtaattga
     2881 gtagctgggt tcagggtcac tggaggtgca aacttgactc agtcgagttc agcaacaaaa
     2941 tctgctagtg agtcacatgg gtgatagtga gccaccagac agcgggctgg tgcaccacac
     3001 tctcatgggc atggggaggc tctcacagtc aaatcctgcc caaagtcagc ttatctgcat
     3061 ccttgatcag gcatgccacc gctgctatta tcctcagaca ggcaggtcat ccagctccta
     3121 ctgggtccat tttctttgat aggtaagtag tggggcgttt cgatgggccc tatgattgag
     3181 tcagccatcc ctcaattctc atccataaac agatgaaaga gcttcctgat atcaggcagc
     3241 ctgagctcag gtgcattcag aagatccctc tctctccttt gtcccagaaa aagggctgtc
     3301 cagccttagt caaagagtat agaggggacg ctagcttggc acccaggaat ccaaagccta
     3361 ccaaaatcag ccatctccaa aaattctcac acgtgtttgg ggtgttaggg gcagtgacac
     3421 gaaggatggc attttttcca gcctctgata acctgttcct cccatcctct aacaggtacc
     3481 gcaggtagct ctaaacttac attgacagat ttggactttc ttggctgaag ctcaataacc
     3541 caatccactc agttctgtca gcagctgctt agtgtctctg agacagtatg cctcggtctc
     3601 tgctggaaga tcatctatat attgcccaag ggtcacatgt gggttagtct catgatagat
     3661 ggtgatgtca cgatataggg cctccatcaa agggttggag aattggtgaa gtccggtggt
     3721 agactggtcc agatgagcgg gcatgtgttc ccctctcagg atcttgccat tcaaaatcaa
     3781 aggactcttg tctttgggga gtcaaggtta ggcacaagaa agcatcttag attctttcat
     3841 tgtgtctgtc attcatttta cttcaaagtg agtgactctg tggatggttc tgagaacagt
     3901 tcttgttaaa gaggtgggta atattaactc accttcagtc aatccttacc agcccattta
     3961 atttaatttc ttttgtgaag taatctaaag agaaaacagg tcatcgttca atgttctata
     4021 ctctgggaaa taaatctgat gatccaaaa
//
