LOCUS       XM_039085991            2844 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pipecolic acid and sarcosine oxidase
            (Pipox), transcript variant X3, mRNA.
ACCESSION   XM_039085991
VERSION     XM_039085991.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039085991.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2844
                     /gene="Pipox"
                     /note="pipecolic acid and sarcosine oxidase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:303272"
                     /db_xref="RGD:1311347"
     CDS             1458..2342
                     /gene="Pipox"
                     /codon_start=1
                     /product="peroxisomal sarcosine oxidase isoform X3"
                     /protein_id="XP_038941919.1"
                     /db_xref="GeneID:303272"
                     /db_xref="RGD:1311347"
                     /translation="MKENPGLKTIQATLSRQGIDHECLSSVHLKQRFPNIRFTKGEVG
                     LLDKTGGVLYADKALRALQHVIRQLGGMVCDGEKVVEIRPGLPVTVKTTLKSYQANSL
                     VITAGPWTNRILRPLGIELPLQTLRINVCYWREKVPGSYSVSQAFPCILSLDLAPHHI
                     YGLPASEYPGLMKVCYHHGDSVDPEERDCPKTFSDIQDVQILCHFVKDHLPGLRPEPD
                     IMERCMYTNTPDEHFILDCHPKYDNIVIGAGFSGHGFKLAPAVGKVLYELSMKLPPSY
                     DLAPFRISRFSKLSKAHL"
ORIGIN      
        1 tttgcatata ttctgggaac agacaatgac ttgtgtcgga tcataaggcc tgagtctttt
       61 gtgatgtgta cagccgggat gctggtacca atagaaaagc caggctctga gaccggctct
      121 ttcctgcccc gccttctccc tttgagttct actatccagc tcctgacccc ggctgcccct
      181 gcttcactga caatatcaga caagatcaca gccgtaggca gtacagctgc tggcagaacc
      241 tggtggcccc ctccgcagct gctgcttcct gtgcctgcga agtgtctggc ttgtcagcca
      301 catcccctcc ctggagcaat ctttgttaac caattccacc tcggcccact gagcagaaga
      361 tgaaatacag agaagccgtt cccaaaccta caaagacagc agccattacg ggggcccttc
      421 cccaaggtga tgctgagagc tggcactttg aactggagca aagacaaaga cagccagagc
      481 ccccgagctg ggaaatggaa ggttcaggga gagttgtcta cccccccccc ctccctgttc
      541 tcctctcccc gctgaccgct agccctactt tagtaacggc tggagattcc tgattaatca
      601 ccagctcctg tggcatggga cacagagggg tcaaccgtcc agagggttct tcaacagcct
      661 cttctcagtg ctggcgcgaa gtgggccgtg aggaaggtgt agtccatacc aagggcttcc
      721 tattaaggca tttctccaac ggtgcacggt ttccctcagg ccaaatagct cagctgtgat
      781 ccacggaaaa tgagaatttc ccaaacacat cttcggactt ggggagggtc cggcatcacg
      841 gattcagatg gaaaatttcc cactgttaga tcaatatctg ggctaaggaa taaatgccac
      901 aggggcagag agctggagca aaatgattac aatcggagca attacattcg gcggaatcag
      961 ctcggtgatt actcctcggg ctggggagct ctgccttcat ccaccacagg acggcttggg
     1021 aattagaaca tcactcagca tttcataatt cgacagattt ccccgttgtc ttggcacaag
     1081 ttcatttccc ccacacaata cgtctctgta aatggagttc tattcaagga aagaaggaag
     1141 gccaggcgga aggaggaagg cgaagtaagc cagggtacag gagagaccaa ggctgtgata
     1201 ttgcatgcag agcttaagag acactctggg atctttctct ggaccggaga gctgacatgt
     1261 gactgcttag aagagctgta agccatgtct ttcccacaat tccacttagc ctggagccca
     1321 gcaggtaaaa aggttcaagg gcacctgagt acatgcagca tctacctgaa atccaacact
     1381 tggcagacgg tggctggaag acctcgaggt tgaggccagt ctaggatgca tagcggactg
     1441 aactcttgtt tctgggaatg aaggaaaatc caggattaaa gacaatccag gccactctgt
     1501 ctaggcaggg gattgaccac gagtgccttt catcagtgca tttaaagcaa cgctttccaa
     1561 acattcggtt caccaaggga gaagtagggc tcttagacaa gactggaggt gttctctatg
     1621 cagacaaggc cctcagagcc ctccagcatg taattcgtca gctaggaggc atggtgtgtg
     1681 atggagagaa ggtagtggag ataagacctg gtctacctgt cacagtgaaa accaccttga
     1741 agagctacca agccaacagc ttggtcatca ctgctggtcc ctggaccaac cggattcttc
     1801 gtcccctggg aattgagttg cctctccaga cccttcggat caatgtgtgt tactggcgag
     1861 agaaggtccc tgggagctat agtgtgtcac aagctttccc atgcatcctg agtctggatc
     1921 tggcccccca ccacatctac ggactgccag cctcagagta cccagggctg atgaaggtgt
     1981 gctatcacca tggtgacagt gtggacccag aggagcggga ctgccccaaa accttctcag
     2041 acatccaaga cgttcagatt ctatgccact ttgtcaaaga tcatttacca ggcctgaggc
     2101 cagagccaga catcatggaa cgctgcatgt acacgaatac tcccgatgag cactttattc
     2161 ttgactgcca cccaaagtat gacaacattg tcatcggtgc tggattctct ggtcatggat
     2221 tcaagttggc ccctgctgtg gggaaggtcc tctatgagct aagcatgaaa ttaccaccat
     2281 cctatgactt ggctccattt cgaataagcc gcttctctaa gctgagcaaa gcccaccttt
     2341 gaccccagct gactgtctcc tgggcaggaa agccctccta gggaagactt ctaagagaag
     2401 gatgtcacct tgagtttctt ttcctcctgt ttcagtggga tctcccgtaa acaccaaatg
     2461 attgaacctc tttccccaat cagcttccca agtctatctc atttcttctt cccagaaagt
     2521 cagcgagact cagagactca ccatcacaga acagcaagga gctttaagat ggatgtccca
     2581 atggggaggg gctcgagacg gctcagtaga ctaagggact cctttaaatt tctctttgct
     2641 gggacactgg ataaatgtga gatagccttg actaaatctg ctcaggggaa tgtaaaaaag
     2701 gtatctttta taaaccacta gtgcctttgg ggtttctttg ccaaaatctt gagccagcct
     2761 ctaccactaa gtctcataaa gtctcacctc taataaataa acatttgcca ggaaaataaa
     2821 aggttgctga aaacaataaa caaa
//
