LOCUS       XM_006246959            2636 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pipecolic acid and sarcosine oxidase
            (Pipox), transcript variant X2, mRNA.
ACCESSION   XM_006246959
VERSION     XM_006246959.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246959.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006246959.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2636
                     /gene="Pipox"
                     /note="pipecolic acid and sarcosine oxidase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:303272"
                     /db_xref="RGD:1311347"
     CDS             1121..2134
                     /gene="Pipox"
                     /codon_start=1
                     /product="peroxisomal sarcosine oxidase isoform X2"
                     /protein_id="XP_006247021.1"
                     /db_xref="GeneID:303272"
                     /db_xref="RGD:1311347"
                     /translation="MAAQTDLWDAIVIGAGVQGCFTAYHLAQNSKKVLLLEQFLLPHS
                     RGSSHGQSRIIRKAYPEDFYTRMMDECYRTWAQLEREAGAQLHRRTELLFLGMKENPG
                     LKTIQATLSRQGIDHECLSSVHLKQRFPNIRFTKGEVGLLDKTGGVLYADKALRALQH
                     VIRQLGGMVCDGEKVVEIRPGLPVTVKTTLKSYQANSLVITAGPWTNRILRPLGIELP
                     LQTLRINVCYWREKVPGSYSVSQAFPCILSLDLAPHHIYGLPASEYPGLMKNTPDEHF
                     ILDCHPKYDNIVIGAGFSGHGFKLAPAVGKVLYELSMKLPPSYDLAPFRISRFSKLSK
                     AHL"
ORIGIN      
        1 atctgccaaa aaaaaaaaaa atgaggataa aaatacacag aaaaaccaga gaatttaatg
       61 agataatgta ttcagaggca gatttaccag gaagctaata aaacttcaac catggggctc
      121 cctaattgag cggtctcttc aaagtcctgc catctaattt tgcatgacta attttttctt
      181 tttttctctc tcttttattt ttagtgctga gtattgaacc caggacctca agcatgccaa
      241 acacaaaagt ctaccgctga gctgtgcctc caatcccccc ttttctttta tcttaaaatg
      301 gacccccaaa ttgtataaga atcaggacct gccaactctg gctctgtccc cagtgtctgt
      361 aacaataccc attgagcctg ctgcctggca cagaaggctt ctctacacat ggcccctatg
      421 tgtgctgagc tagcgcctgg ctccccgtgt gcccgaggac aaggtccttc ctctcgccgt
      481 cctttcctag tttttttttt tcccccagta tcatttattc tcctttttca acaagaaagt
      541 aaaacacacc gagaatgatt tcataatcac aaaactgccc tcccagttgg cccctgcatc
      601 tactccctga cctccccacc cgccagggag gagggccaaa ccctgggcat cctgccaagt
      661 tcttagctgc ccctgaagat ctctggagga agtcaagctg cagagaggaa aagccagcag
      721 ggggaggcag cattcccggt gcccagcttg gtctaggagg cattgaaatt ccagggccga
      781 agtcctgaga caaagatcat aatgagacag gaaggtggca tgggaaggcg cccatttgca
      841 tgacaataat tgagccaaga atagcaagtt agagggatac aagggtgagg ctggcagctg
      901 agccgggcga aacctcacaa atcagtctac ccagctctgc tctgcagggg gaggcggagg
      961 ctgagccccg tgccaggctt ttctgggagg gaaagaagga caaggacact ggccccaagg
     1021 gattttggga acactagctt aactggactt tgcctttctc ctccccctct agcctggagg
     1081 tgcctttgtt tgccttctcc ttcgtgggtt ttgtggcatc atggctgctc agacagatct
     1141 ctgggatgct attgtgattg gagcaggcgt ccagggctgt tttaccgcgt accacctggc
     1201 ccagaattcc aagaaggtcc tcctgctgga gcagttcctt cttccccatt cccgaggaag
     1261 ctcacatgga cagagccgca taatcagaaa ggcttacccc gaggacttct acacaaggat
     1321 gatggatgaa tgttatcgga catgggccca gctggagcgt gaagctggag cccagttgca
     1381 caggcggact gaactcttgt ttctgggaat gaaggaaaat ccaggattaa agacaatcca
     1441 ggccactctg tctaggcagg ggattgacca cgagtgcctt tcatcagtgc atttaaagca
     1501 acgctttcca aacattcggt tcaccaaggg agaagtaggg ctcttagaca agactggagg
     1561 tgttctctat gcagacaagg ccctcagagc cctccagcat gtaattcgtc agctaggagg
     1621 catggtgtgt gatggagaga aggtagtgga gataagacct ggtctacctg tcacagtgaa
     1681 aaccaccttg aagagctacc aagccaacag cttggtcatc actgctggtc cctggaccaa
     1741 ccggattctt cgtcccctgg gaattgagtt gcctctccag acccttcgga tcaatgtgtg
     1801 ttactggcga gagaaggtcc ctgggagcta tagtgtgtca caagctttcc catgcatcct
     1861 gagtctggat ctggcccccc accacatcta cggactgcca gcctcagagt acccagggct
     1921 gatgaagaat actcccgatg agcactttat tcttgactgc cacccaaagt atgacaacat
     1981 tgtcatcggt gctggattct ctggtcatgg attcaagttg gcccctgctg tggggaaggt
     2041 cctctatgag ctaagcatga aattaccacc atcctatgac ttggctccat ttcgaataag
     2101 ccgcttctct aagctgagca aagcccacct ttgaccccag ctgactgtct cctgggcagg
     2161 aaagccctcc tagggaagac ttctaagaga aggatgtcac cttgagtttc ttttcctcct
     2221 gtttcagtgg gatctcccgt aaacaccaaa tgattgaacc tctttcccca atcagcttcc
     2281 caagtctatc tcatttcttc ttcccagaaa gtcagcgaga ctcagagact caccatcaca
     2341 gaacagcaag gagctttaag atggatgtcc caatggggag gggctcgaga cggctcagta
     2401 gactaaggga ctcctttaaa tttctctttg ctgggacact ggataaatgt gagatagcct
     2461 tgactaaatc tgctcagggg aatgtaaaaa aggtatcttt tataaaccac tagtgccttt
     2521 ggggtttctt tgccaaaatc ttgagccagc ctctaccact aagtctcata aagtctcacc
     2581 tctaataaat aaacatttgc caggaaaata aaaggttgct gaaaacaata aacaaa
//
