LOCUS       XM_039106178            2221 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol-4-phosphate
            5-kinase-like 1 (Pip5kl1), transcript variant X1, mRNA.
ACCESSION   XM_039106178
VERSION     XM_039106178.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106178.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2221
                     /gene="Pip5kl1"
                     /note="phosphatidylinositol-4-phosphate 5-kinase-like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 18 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:687758"
                     /db_xref="RGD:1597527"
     CDS             65..1885
                     /gene="Pip5kl1"
                     /codon_start=1
                     /product="phosphatidylinositol 4-phosphate 5-kinase-like
                     protein 1 isoform X1"
                     /protein_id="XP_038962106.1"
                     /db_xref="GeneID:687758"
                     /db_xref="RGD:1597527"
                     /translation="MAKKTQETGFKLPAATDNPRGVRPRFKRKLRGESSLQHPNQSPT
                     IPPSQNQSSEDAASSGVEPKGKGQRRFRGLSAKRTTVTRRPFLRHLSQETQSGQDQGS
                     EDPASPEVGPAGKGKRPPGELSPASATVAGRPFPRYLSRRQAALKDQDQSSEDAASLE
                     VGPAGKGKRPSRRLGRKVTGTPRLAVRNAEAEPDSCNPASEPNQEKLHLGAMAALSLG
                     SREIPSHSLDVGNRSTSSGSRRGLFWHLRAKHSRVGLFEIGPGHELHRMTRMMQEGLW
                     AATQVSMNNPPTGPPTQKDFLEVMTQVHKEGFELGTLAGPAFARLRQSIGLTEEDYQA
                     TLGPGDPYLQFLSTSKSKASFFLSHDQRFFVKTQRRQEVQVLLAHLPRYVRHLQQYPH
                     SLLARLLGVYSLRVAQGKKKYFIIMQCIFYPTSRISERYDIKGCEVSRWVDPVPEGSP
                     LLLVLKDLNFREKTIKLGTQRSWFLRQMALDTAFLRELNVLDYSLLVGVQFLHKDEKV
                     DYHCLIGTIKSVQGAPKSENKDGQNRRMLPNLPNALHIVDGPDQRYFLGLVDLTTVYG
                     FRKRLEHLWKMVRYPGQSVSTVSPAHYARRLCQWAEAHTE"
ORIGIN      
        1 ggagatggtc acttctttct ctgtttttag tttctctacc tgagagacag tcaatgggaa
       61 tttcatggct aaaaagaccc aagaaacggg atttaagcta cctgccgcca cagacaaccc
      121 tagaggcgta cgtcctcggt tcaaaaggaa attgagagga gaatcatctc tccagcaccc
      181 caaccaaagc ccaacgatcc cacctagcca gaaccagagt tcagaggatg ctgcatcctc
      241 gggggtagaa cccaagggca agggccagcg tcgctttcgt ggattgagtg caaagcgtac
      301 aacggtgaca agaaggcctt ttctacggca cctcagccag gagactcagt ccggtcaaga
      361 ccagggttca gaggatcctg catccccgga ggtgggaccc gcaggcaaag gcaagcgccc
      421 tcctggcgaa ttgagtccag cgagtgcaac ggtggcagga aggcccttcc cccgatacct
      481 cagccgacgc caggcagctt tgaaggacca ggaccagagt tcagaggatg ctgcatcctt
      541 ggaggtggga cccgcaggca aaggcaagcg cccctctcga agattgggca gaaaggtgac
      601 aggaacgccg cgattggccg ttcgcaatgc ggaggcggag cctgactcct gcaacccggc
      661 ctcggagcca aatcaagaga agctgcacct gggggcgatg gccgcactaa gccttggttc
      721 ccgcgagatc ccgtcccact ccctggatgt tggaaacagg tccacttcct cagggagccg
      781 ccgtggcctc ttttggcacc tccgagccaa gcattctaga gttggcctgt ttgagatcgg
      841 tccaggacac gaactgcata gaatgacacg gatgatgcag gaagggctgt gggctgccac
      901 ccaggtctcc atgaacaacc cacccacggg acctcctacc cagaaggatt tcctggaagt
      961 catgacccag gttcacaaag agggcttcga actgggcacc ctggctggtc cagcttttgc
     1021 acggctgagg caatccattg gcctgactga agaagactac caggctactc ttggccctgg
     1081 tgacccctac cttcaattcc tcagcacctc caagagcaag gccagcttct tcctgtccca
     1141 cgaccagcgc ttctttgtga agacccaacg acgccaggaa gtgcaggtgc tgctcgccca
     1201 cctgccccgc tacgtgcggc acctgcagca gtacccacac tccctgttgg cacggttgct
     1261 gggagtatac agtttgcggg tggctcaggg gaaaaagaag tacttcatca tcatgcagtg
     1321 catcttctac cctaccagcc gcatctctga gaggtacgac atcaagggtt gtgaagtaag
     1381 ccgctgggtg gatccagtcc ctgagggcag cccccttctc ttggtgctga aggacctcaa
     1441 ctttcgagaa aagaccataa aactgggaac ccagcggagc tggttcctcc gccagatggc
     1501 gctagacacc gccttcctgc gagagctgaa tgtgctggat tatagcctcc tggtgggcgt
     1561 ccagtttctc cacaaagacg aaaaagtcga ttaccactgc ctcatcggga caatcaagtc
     1621 tgtacaaggt gcaccaaagt cggagaacaa ggacggccag aaccgacgga tgctgcccaa
     1681 cctccccaat gccctccata tcgtggacgg accagaccaa cgctattttc tgggcttggt
     1741 ggacctaact accgtgtatg ggtttcgcaa acggctggaa catctgtgga agatggtgcg
     1801 ctatccaggc cagagcgtct ccactgtcag cccggctcac tacgcccgtc gcctctgcca
     1861 gtgggcggag gcgcacactg agtgactctt accaatcggc cttcttccca tccggacaat
     1921 gcgcccgcaa ccattttcca gctgtatcca gggagctagc ctgcggttca tctatcagcc
     1981 acaagagggc agcaccctca taactaatgc tgtgaagact aagccccatt cggtgtcggt
     2041 gctgtaccac gcatagagca aggacccccg agcccctatc cttagctcgt ttactattaa
     2101 aaaatgttga tattctcttt ttacagacca cgaaatggag gttcacggat tgaaggggat
     2161 gagcaaggcc atttagcaat aaatactgga accagcctac acttgggcct gggaacttac
     2221 a
//
