LOCUS       NM_001401212             502 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus peptidylprolyl cis/trans isomerase,
            NIMA-interacting 4 (Pin4), transcript variant 2, mRNA.
ACCESSION   NM_001401212 XM_006257122
VERSION     NM_001401212.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Fujiyama-Nakamura,S., Yoshikawa,H., Homma,K., Hayano,T.,
            Tsujimura-Takahashi,T., Izumikawa,K., Ishikawa,H., Miyazawa,N.,
            Yanagida,M., Miura,Y., Shinkawa,T., Yamauchi,Y., Isobe,T. and
            Takahashi,N.
  TITLE     Parvulin (Par14), a peptidyl-prolyl cis-trans isomerase, is a novel
            rRNA processing factor that evolved in the metazoan lineage
  JOURNAL   Mol Cell Proteomics 8 (7), 1552-1565 (2009)
   PUBMED   19369196
REFERENCE   3  (bases 1 to 502)
  AUTHORS   Kessler,D., Papatheodorou,P., Stratmann,T., Dian,E.A.,
            Hartmann-Fatu,C., Rassow,J., Bayer,P. and Mueller,J.W.
  TITLE     The DNA binding parvulin Par17 is targeted to the mitochondrial
            matrix by a recently evolved prepeptide uniquely present in
            Hominidae
  JOURNAL   BMC Biol 5, 37 (2007)
   PUBMED   17875217
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 502)
  AUTHORS   Surmacz,T.A., Bayer,E., Rahfeld,J.U., Fischer,G. and Bayer,P.
  TITLE     The N-terminal basic domain of human parvulin hPar14 is responsible
            for the entry to the nucleus and high-affinity DNA-binding
  JOURNAL   J Mol Biol 321 (2), 235-247 (2002)
   PUBMED   12144781
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Feb 4, 2022 this sequence version replaced XM_006257122.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1635606.1,
                                           SRR22582419.2976483.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               JAXUCZ010000021.1  71272034-71272162
            130-203             JAXUCZ010000021.1  71274085-71274158
            204-323             JAXUCZ010000021.1  71278066-71278185
            324-502             JAXUCZ010000021.1  71278498-71278676
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..502
                     /gene="Pin4"
                     /note="peptidylprolyl cis/trans isomerase,
                     NIMA-interacting 4"
                     /db_xref="GeneID:684441"
                     /db_xref="RGD:1590326"
     exon            1..129
                     /gene="Pin4"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..482
                     /gene="Pin4"
                     /EC_number="5.2.1.8"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein (peptidylprolyl cis/trans isomerase)
                     NIMA-interacting, 4 (parvulin); peptidyl-prolyl cis-trans
                     isomerase NIMA-interacting 4"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase
                     NIMA-interacting 4 isoform 2"
                     /protein_id="NP_001388141.1"
                     /db_xref="GeneID:684441"
                     /db_xref="RGD:1590326"
                     /translation="MPPKGKSGSGKGGKGRPAETVRELRGGAASGSDSADKKSQGPKG
                     GGNAVKVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGDLGWMTRGSMV
                     GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK"
     exon            130..203
                     /gene="Pin4"
                     /inference="alignment:Splign:2.1.0"
     exon            204..323
                     /gene="Pin4"
                     /inference="alignment:Splign:2.1.0"
     exon            324..502
                     /gene="Pin4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttttcta gcaccggaac aactgccgga gagttcaacg gcaagcttaa gagatgccgc
       61 cgaaggggaa aagtggttct ggaaaaggag ggaaaggtag accggccgag acagtcagag
      121 agcttagggg aggtgcagcc tctgggagcg atagtgctga caagaagtct cagggtccta
      181 aaggtggtgg caatgcagta aaggtcagac acattctatg tgaaaaacat gggaaaatca
      241 tggaagctat ggaaaagtta aagtctggga tgagattcag tgaagtggcc acccaataca
      301 gtgaggataa agccagacaa gggggtgact tgggttggat gaccagagga tccatggtgg
      361 ggccatttca agaagcagcc tttgccttgc ctgtaagtgg gatggataag cctgtgttta
      421 cagacccacc agttaagaca aaatttggat atcatattat tatggttgaa gggagaaaat
      481 aaaatcacat gaaagactga gt
//
