LOCUS       XM_039090020            4269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired immunoglobin-like type 2
            receptor beta 1 (Pilrb1), transcript variant X1, mRNA.
ACCESSION   XM_039090020
VERSION     XM_039090020.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090020.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4269
                     /gene="Pilrb1"
                     /note="paired immunoglobin-like type 2 receptor beta 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 1 long SRA read, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 36 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:681341"
                     /db_xref="RGD:1584675"
     CDS             1208..1846
                     /gene="Pilrb1"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_038945948.1"
                     /db_xref="GeneID:681341"
                     /db_xref="RGD:1584675"
                     /translation="MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSI
                     EIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTF
                     GVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHDLSTTMRTPSIITSA
                     DPTAGLENIRGQRNPSLLNLGGIIGMVVAKVVVIIPLYGWMISLWWKQRPAE"
ORIGIN      
        1 ctgaagccac cacagcctct gcttgcatgt ctcatgtcgt cacccaagta acaggccagc
       61 tgtgttcact gtcagacatg tcccaggtct tatgtcttga gtgacacata gctgactgag
      121 ccatcgctgc ccacttattc caaagaaaat tctggaatga ctttccaaag aaactaaaaa
      181 taattagagg gagtcactca ggaactttgt ggaaggagcc ttctcagaag ctgcactgag
      241 ccagcttacg gaagtctctg tgtggaaagg aagactataa gaactcaatg tgactaatgt
      301 ccagtcaatc agccatgtga ctgtcatgtg acttgtgcca ggtcttctct gatccttgct
      361 atcttattct gagtgagtgt tatgttggtg gggagggaaa ggggtgcgat tctggtagaa
      421 aggctcaatt aaaaactaga tttagagtga ctgtctgctt gtggagggaa gttagaaact
      481 gtgccacagg gagtagacca agtcaaaaga gagtcctcca ggccttgatt ctgcctgggc
      541 actgtgaggg gcacctaaaa gacacaaaaa tactaaagcg tatatgaagt acaggaaggg
      601 ggaagtagga atagggtaaa gggtcactag gccaaggctt gggactgaat gtgtttcctc
      661 ataaccacct tcctcattct gtatgaagtg tttagagaca gacaacttca ttatgtgaga
      721 ttattagaga gacacagtaa ccagcatggt gggagacaaa agagattgag gagggagagg
      781 aaaggaatag aggaaataca gaggaaagag gcagagtgat aacaagccac ttacgaagta
      841 gaatagagaa gataaggcat acggtcaagg tggaagaggg gagaaccagc cctgccaagg
      901 actagggtgt gtctcccagt caaaactagg ggcccaagag ccctgtcatg ttgtcagtaa
      961 ccataagagc ggatcttctg caacatggga aaaaaagaag ccatatcaat aaaggaagtt
     1021 gctgtccaca aggaggtgga gatggagagg tcctgcccaa ctcagtcctc cacttgagaa
     1081 ggtctgagca tgggtgtcac tttactctga ttctctctgg actcctgagc accccagtgc
     1141 gcctagacag ggcattgatg ccttcctgat agccctgctg ctcttccttc ctggacataa
     1201 tctggccatg gctcagattc tccttctttt gctgtcggca acatgtctgc acactgggaa
     1261 ctcaggagga tacacaagaa aaaattactt tggggtgaac caaccagcag tcctctctgg
     1321 agtccagggt ggctccattg agatcccctt ctccttctac ttcccctgga agttggccaa
     1381 ggatccacag atgagcatag cctggagatg gaaagaagtc catggggaat tcatctacca
     1441 gtcaactcta tctttcattc atgagcactt caaggaccgg ctcatcctaa actggacaca
     1501 gggtcagaca ttcggagtcc tcagaatcct gaacttgaag gagaatgacc aggccacata
     1561 cttcagccaa gtttgcctgc aaacaacaga aggcatgaag tgttggcagt ctattcctgg
     1621 gacaaaactc attgttacac atgatctcag tacgaccatg aggaccccct ccatcatcac
     1681 ctctgcagac cccacagctg gcctggagaa cataaggggc caaaggaatc cttcactgct
     1741 gaacctgggg ggcatcattg ggatggtcgt ggccaaagtt gtagtcatca tccccctcta
     1801 cggatggatg atctctctgt ggtggaagca aaggccagca gagtaacgcc taaaccccag
     1861 ccaggctccg gatgagacat catcccttct tcctcaacta agagacctcc cagtgttagg
     1921 atctctcaac agggagatta gtttatatca aaatagttat tggtgaccac ataccctgca
     1981 tcccacaacc tcccatgtga ttctctctgg gaatcagaat tctcagaatt cttcagaatt
     2041 ctgctgtgaa agatcaccat acttggataa cccccacttc tgccacatgg tctctgaaac
     2101 cctctgcttg aaaccaactt catctcatat gtctctgggc cagagagcct gactgtgctc
     2161 ttcattctct gctcatggac ttattgacac tttcaataaa tacctcactt cccgcaatcc
     2221 atctccatgt ctctcctgag cccgctcata acacaactta gagagtggca cactgtgtct
     2281 agcatgtggg tcactgggat agatataagg acaatagtct gcattgaaac caacagcctg
     2341 ataatcaagg ttcacctctt ccttactctc aggaggctga catctcatcc agagcccaac
     2401 ccccacccca catgcttcac atcaagtgtc agaccaaggc ttcctttcct cacaagccca
     2461 actgcatgca ctcacattct catttcctac catgtcgaca ttctggactc tgggttctct
     2521 cctagaatag gacatttgtc gcaagtccaa tctgtcctaa catttgatag tcatcacatc
     2581 aacttctaat aaaaccctgt ggggacacag aaaaccatcc agagtgaccc aggaggaatg
     2641 aaaccaggct tctcatgaca gaagaagttc attgacatac tctatacaga tctaccaatg
     2701 acactgagcc ataattgaaa tggcacaaat acagctccag ttcaccaatc acaaggctca
     2761 atgagtacca tacatgggcc ttttctgagt aattggggaa actgtttcca atcccatgag
     2821 gcaagctaga gctacttggg gtcatgaaga ggtcaccaat actcatgtgg ctaaagtgaa
     2881 gcgccctgga gcagctatga ggtatctact gttgttgtga ctgcatccta acaccctaag
     2941 actgaacaca gcagctctca tgagtacagg gaccttaaaa gcagggatga tattttctct
     3001 gagcattcct gaagggttgt cacagcagga tgccatgatg gaagtctgcc cagccgtttc
     3061 aaggagtcca tttgtcaggt ccatgtcgca ggcatctgta ctcagagaag gggccttaat
     3121 ccacttgctc aaatgtgact tctcaggtcc tttttcattg ctcaagatgg aaaaacaaga
     3181 gacaaaccca gagcaaagac ataaagaaac aacgttctca acaacatagg tgcttaagct
     3241 ccagttgaat acatttaggc agactgtatc tctgatgtac caaagggaac attatggggc
     3301 aactaggaag tagacattgg tttctgccct ggtgacaagt gtttggtatg tgtgttccct
     3361 agactgagct gatcggtaaa aaaaaagtac taaaagaaat tggggatcaa aacatgcctg
     3421 tcatccctac tattgacagg tagtgatggg aagattgtca attggaatac tggttcttaa
     3481 cctgtgggtc attacatctt tgaagtttga aggacatttt cacaggagtc acatttcaga
     3541 tatcctgaat atcagatgtt tatattatga tcataactgt agcaaaatca cagacataaa
     3601 ttaccaataa aataatttta tggttggagt caccccaaca tgaggaaata tcacagcatt
     3661 acaaagcttg agaaccactg aattggaggc tactcttggt acctcttgag tttaggccag
     3721 cctgggttgc atgagactgt cttcaaatca acagcaaagc ttaacaaaac tgaaaacaat
     3781 aaagagggtc atggattgtc gcgcccacct cagccggcaa ggaagatgca acaccgtcgg
     3841 attcttctca acagccttta ttgcaggacc acctcattgc tgatacgggg acctcaagca
     3901 gcaaaggcgc tcgccttata tatacaacag actggggcta ttctaatttt ctttcaggga
     3961 ttggcagagc acgaatcacc ccactatcac ctctgctact tgtcggagca tgaaccaccc
     4021 cattagcatg gtaccgcccc agccagattg acaccaggtg caaacccgca catgcgcagt
     4081 actgttgtgt accacaggag ggtgccagat cacctcatta tcctaagact gccctggcaa
     4141 ggggacaagc ctgcgtatac gcgataagtt gtttacatcc agacgggact ggatgtcagt
     4201 gccatctttg ttttaccgcg cagctcccta catctccccc ctttagttta ataaaatgac
     4261 tggactaga
//
