LOCUS       NM_001405389            1081 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus paired immunoglobin-like type 2 receptor alpha
            (Pilra), mRNA.
ACCESSION   NM_001405389 XM_008769106
VERSION     NM_001405389.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Fournier,N., Chalus,L., Durand,I., Garcia,E., Pin,J.J.,
            Churakova,T., Patel,S., Zlot,C., Gorman,D., Zurawski,S., Abrams,J.,
            Bates,E.E. and Garrone,P.
  TITLE     FDF03, a novel inhibitory receptor of the immunoglobulin
            superfamily, is expressed by human dendritic and myeloid cells
  JOURNAL   J Immunol 165 (3), 1197-1209 (2000)
   PUBMED   10903717
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Apr 22, 2022 this sequence version replaced XM_008769106.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ234400.1, SRR22582419.2690186.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JAXUCZ010000012.1  23452697-23452848
            153-539             JAXUCZ010000012.1  23453146-23453532
            540-743             JAXUCZ010000012.1  23457832-23458035
            744-774             JAXUCZ010000012.1  23460060-23460090
            775-821             JAXUCZ010000012.1  23462763-23462809
            822-853             JAXUCZ010000012.1  23463130-23463161
            854-1081            JAXUCZ010000012.1  23463327-23463554
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..1081
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /note="paired immunoglobin-like type 2 receptor alpha"
                     /db_xref="GeneID:100910669"
                     /db_xref="RGD:6497409"
     exon            1..152
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..979
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /note="paired immunoglobulin-like type 2 receptor
                     alpha-like"
                     /codon_start=1
                     /product="paired immunoglobin-like type 2 receptor alpha
                     precursor"
                     /protein_id="NP_001392318.1"
                     /db_xref="GeneID:100910669"
                     /db_xref="RGD:6497409"
                     /translation="MARILLLLLSVACLHTGNSAGYQKKYGYGVDQPEHLTGIQGGSI
                     EIPFSFYFPWEFTKDPKISIAWRWKHFHGECIYNSNTHFIHEHFKGRLIVNWTQGQTS
                     GVLRILNLKKNDQTTYFGRIFLQTAEGMEKWQSIPGTNLTVTNNTSTPATLPSTTTAT
                     PSTHPQTVTTEGMKDEPKSGLDPQTIIVLAVAAAVFLAVVLGLTVFLGWRRKQGQRTK
                     AETPAREPLENSEKRESIGHEGQYMDPTENPKDNNIVYASISLSSPTSPGAAPSLPVQ
                     KNPQEETVYSTIKAK"
     exon            153..539
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     exon            540..743
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     exon            744..774
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     exon            775..821
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     exon            822..853
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1081
                     /gene="Pilra"
                     /gene_synonym="RGD1562847"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accctgattc tctctggact gctgagtgcc ccagtgtccc tagcagggca tcaatgactt
       61 cctgacagcc tggttgccct cacttcctgg acggaatctg gctatggctc gaatcctcct
      121 tcttttgctg tcggtagcat gtctgcacac tgggaattca gcaggatatc aaaaaaagta
      181 tggctatggt gtcgaccaac cagaacacct cactggaatc caaggcggct ccatcgagat
      241 ccccttctca ttctacttcc cctgggagtt caccaaggat ccgaagataa gcatagcctg
      301 gagatggaag cacttccatg gggaatgcat ctacaactcc aacacgcatt tcattcatga
      361 gcattttaag ggccggctca tcgtgaactg gacacagggt cagacatctg gagtcctcag
      421 aatcctgaac ttgaagaaga atgaccagac cacatacttc ggcagaattt ttctgcaaac
      481 agcagaaggc atggagaagt ggcagtcaat ccctggcacc aacctcactg tgaccaataa
      541 caccagcacc cccgctacac ttccaagcac caccactgcc acaccttcta cacaccccca
      601 aaccgtcaca acagaaggca tgaaggacga gccaaagagt ggcctggatc cacaaaccat
      661 aattgtgttg gcagtggctg ctgctgtgtt cctggctgtg gttttgggat tgacagtgtt
      721 cctcgggtgg aggagaaagc aaggccagag gactaaagca gaaaccccag ccagggagcc
      781 attggaaaac agtgagaaac gtgagagtat tggccatgaa ggacaatata tggatcccac
      841 agagaacccc aaggataata acatcgtgta tgcctccatc tccctctcaa gcccgacctc
      901 accaggagca gcacctagcc tgcctgtcca aaagaacccc caggaagaga ccgtgtactc
      961 taccataaag gccaaatgag tgggtctggg tgacactctt acggtgactt ttgtttctgg
     1021 tgggaagact cccagcttcc actgacaaca cagacagaaa taaactcacg ggtcactgaa
     1081 a
//
