LOCUS       NM_001191793            1304 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus PIH1 domain containing 2 (Pih1d2), mRNA.
ACCESSION   NM_001191793 XM_236221
VERSION     NM_001191793.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Simicek,M., Lievens,S., Laga,M., Guzenko,D., Aushev,V.N., Kalev,P.,
            Baietti,M.F., Strelkov,S.V., Gevaert,K., Tavernier,J. and
            Sablina,A.A.
  TITLE     The deubiquitylase USP33 discriminates between RALB functions in
            autophagy and innate immune response
  JOURNAL   Nat Cell Biol 15 (10), 1220-1230 (2013)
   PUBMED   24056301
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jul 17, 2010 this sequence version replaced XM_236221.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.45116.1,
                                           SRR26643295.31614.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JAXUCZ010000008.1  59863271-59863505
            236-329             JAXUCZ010000008.1  59864123-59864216
            330-533             JAXUCZ010000008.1  59864427-59864630
            534-657             JAXUCZ010000008.1  59865807-59865930
            658-903             JAXUCZ010000008.1  59867166-59867411
            904-1169            JAXUCZ010000008.1  59867992-59868257
            1170-1304           JAXUCZ010000008.1  59871328-59871462
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..1304
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /note="PIH1 domain containing 2"
                     /db_xref="GeneID:315645"
                     /db_xref="RGD:1310503"
     exon            1..235
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     exon            236..329
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     exon            330..533
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     CDS             357..1304
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /codon_start=1
                     /product="PIH1 domain-containing protein 2"
                     /protein_id="NP_001178722.1"
                     /db_xref="GeneID:315645"
                     /db_xref="RGD:1310503"
                     /translation="MKASSKGLLTHISQFWSMLDDLAENDPERYRNFIQQELKDGKQL
                     CADPEPQLCLQTKILKPKEKVLFINLCQWERIPAPQSATHPVPISVGRPEDFPETSDA
                     CTIIDVAYNPGVLQAAEKDQGIKDQLIRMAMRCIEERLQLTLAHSYHVTHFRVKGSIQ
                     RMKERLMGIKTHFPNFKEMMRKDNTLERIRSSTVSEPSHLPEVLLTKKQVSAKGRCLI
                     EEIASSEVQVEAKTPAYELKVVKDQNEKPLKIELKVELPGIKAVSLCELSVSEVDLLI
                     EVSEMYRLCLNLPESINTEMTTAKFIKNKSILIITMPLA"
     exon            534..657
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     exon            658..903
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1169
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1304
                     /gene="Pih1d2"
                     /gene_synonym="RGD1310503"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgggctcg ccggtcgccg tggaagctgt caggtgcagg aaggaagccg gcgctctcct
       61 gagagagaag cgggacgagc ccgctgagga gccagtccgg cactggagaa aagaaccgga
      121 actggatata gagacaccac tctaatttgc actccccgga ctcagttaga cggtgtaccg
      181 ggcctggtta ccatggtaac tagagtcaca gtttgtctcc aaactgagag aagaggtctg
      241 gaaggcacca agtcagccaa tattccagct attggaacaa cagtcctttc tgtttcctct
      301 gtatttgtga ggaccagaca gaagtacagg ttccaaaggc ctgagtcatc accatcatga
      361 aggcttcctc aaagggtctt ctcacccaca tctcccagtt ctggagcatg ctcgatgatt
      421 tggcagaaaa tgatcccgag cgctaccgga acttcattca gcaggagctg aaagatggca
      481 aacagctctg tgccgaccca gaacctcaac tctgtctaca gacaaagatc ctaaaaccaa
      541 aagaaaaagt actttttatc aacctatgtc agtgggaaag gatccccgca ccacaatcag
      601 ccactcatcc tgtacctata agtgttggca gaccagaaga tttccctgag acatcagatg
      661 cttgtaccat cattgatgtt gcctacaatc ctggtgttct gcaagcggca gaaaaagacc
      721 aaggaatcaa agatcagcta attaggatgg ccatgcggtg catcgaggag cgactccagc
      781 tcacacttgc acattcatac catgttactc attttagagt gaaaggaagc attcagagaa
      841 tgaaagaaag gctgatgggc attaaaactc acttcccaaa cttcaaagag atgatgagaa
      901 aagacaacac tcttgaaagg atcagaagca gtactgtgag tgaacccagt caccttcctg
      961 aggtgctatt gacaaagaaa caagtgtcgg ccaaagggag atgtcttata gaagagattg
     1021 ctagttcaga agtccaggtg gaggctaaga cacctgccta cgaattaaag gttgtaaagg
     1081 atcagaacga gaagccgctg aaaattgagc tgaaagtcga gttacctggg attaaggcag
     1141 tctctctctg tgagcttagt gtttctgagg ttgatttatt gattgaggtc tctgagatgt
     1201 accgattatg cctgaatctt ccagaatcga ttaatacaga aatgactaca gcaaaattca
     1261 taaaaaataa atccatatta atcattacaa tgcccctggc ataa
//
