LOCUS       NM_001398770            2094 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class Z (Pigz), transcript variant 1, mRNA.
ACCESSION   NM_001398770 XM_008768809
VERSION     NM_001398770.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Taron,B.W., Colussi,P.A., Wiedman,J.M., Orlean,P. and Taron,C.H.
  TITLE     Human Smp3p adds a fourth mannose to yeast and human
            glycosylphosphatidylinositol precursors in vivo
  JOURNAL   J Biol Chem 279 (34), 36083-36092 (2004)
   PUBMED   15208306
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 22, 2021 this sequence version replaced XM_008768809.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.39612.1,
                                           SRR26643298.67177.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                JAXUCZ010000011.1  82356699-82356774   c
            77-270              JAXUCZ010000011.1  82340491-82340684   c
            271-2094            JAXUCZ010000011.1  82336823-82338646   c
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..2094
                     /gene="Pigz"
                     /gene_synonym="Pigzl1; RGD1307107"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class Z"
                     /db_xref="GeneID:303872"
                     /db_xref="RGD:1307107"
     exon            1..76
                     /gene="Pigz"
                     /gene_synonym="Pigzl1; RGD1307107"
                     /inference="alignment:Splign:2.1.0"
     exon            77..270
                     /gene="Pigz"
                     /gene_synonym="Pigzl1; RGD1307107"
                     /inference="alignment:Splign:2.1.0"
     CDS             153..1829
                     /gene="Pigz"
                     /gene_synonym="Pigzl1; RGD1307107"
                     /note="phosphatidylinositol glycan, class Z; GPI
                     mannosyltransferase 4; phosphatidylinositol glycan, class
                     Z-like 1; GPI mannosyltransferase 4-like"
                     /codon_start=1
                     /product="GPI mannosyltransferase 4 precursor"
                     /protein_id="NP_001385699.1"
                     /db_xref="GeneID:303872"
                     /db_xref="RGD:1307107"
                     /translation="MAARVIWGSLSLLRVLWCLLPQTGYIHPDEFFQSPEVMAEDILG
                     VQASRPWEFYPSSSCRTVVFPLLTSGSTFWLLRLWEELGLWPGLVSGYMLLVGPRLLL
                     TSLSFALDWAMYYLAPLWGADRWNALCLLSGSYVTLVFYTRTFSNTIEGLLFTWLLVL
                     VSPYVARSPTSKKPTPGPRWHSYLLGAIVAAGFFNRPTFLAFALAPVSLWGIHRALEL
                     GGIKALIREALVLLPGAALAAGLFVAVDSWYFSSLSGSTGVVLTPVNFLYYNLDPQNL
                     ARHGTHARLTHLAVNGFLLFGVLHAQALQAAWQQLLACLRAFPQTRLLGEPGTQGLLS
                     SSKSRLLLLYFTPLLLLSAFSHQEPRFLIPLLVPLVLLCSPQAQPIPRKGTLVLFNVS
                     GALIFGCLHQGGLVPGLKHLEQVVHAPVLSGTTTHYTLLFTHTYMPPQHLLHLSGLGS
                     PVEVVDMGGAEDRVLCQALNNFSRQAACQLAGGPWLCRFFVVTPGTNRHALEQCHFPL
                     KNETLLFPHLTMEDPPALSSLLSGAWREHLSLHIIELEKPVMTEWSKIQP"
     exon            271..2094
                     /gene="Pigz"
                     /gene_synonym="Pigzl1; RGD1307107"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgtaggg ctgtaggtgc aggctttcgc tccaggcgac ccgggtagcc agcgcggcag
       61 gtgcagcaca gctcggatgt agctctccag actggcacct gtgagaactg tgacagactt
      121 ttcagtcctg tgtctgacaa cctgatgtga cgatggcggc cagggtgatt tggggtagcc
      181 tcagcctgct tcgagtctta tggtgtctcc ttccccagac tggctacata cacccagatg
      241 aattcttcca gtcacctgag gtcatggcag aggacatcct gggtgtgcag gcttcacggc
      301 cctgggaatt ttaccccagc agctcctgcc gcactgtggt cttcccactg ctgacctctg
      361 gctctacctt ctggttgctc aggctctggg aagagctggg gctctggcct ggtctggtga
      421 gtggctacat gctgctggtg gggccccgac tcctcctcac ttccctctcc tttgccctgg
      481 actgggctat gtactatctg gccccgttgt ggggggcaga tcgttggaat gccttgtgtc
      541 tgctgtctgg ttcctatgta accctggttt tctacacaag aaccttctcc aacaccatcg
      601 agggactgct cttcacctgg ctactggtgc tggtgtcccc ttatgtggca aggagtccca
      661 catcaaagaa gcctacccca ggtccacggt ggcacagcta tcttcttggt gctatcgtgg
      721 ctgccggctt cttcaatcgg ccaacctttc tagcctttgc tctggccccc gtctctctct
      781 ggggcatcca tagagctttg gaacttggtg gtatcaaggc cctgattcgg gaggccctag
      841 tgctactgcc gggggctgct cttgctgcag ggctgtttgt agccgtggac agctggtact
      901 tctccagtct ctcgggatcg acaggcgtcg ttctcacacc tgtcaacttc ttgtactata
      961 acctggatcc ccaaaacctt gcaaggcatg gcacgcatgc acggctcact cacctggcag
     1021 tcaatggctt cctgctcttt ggggtactgc atgctcaagc tttgcaggct gcatggcaac
     1081 aactcctcgc ctgcctccgt gcatttccac aaacccgcct cttgggggag ccgggtaccc
     1141 agggtctgtt gtctagctcc aagtctcgtc tcctccttct ctactttaca cccctgctcc
     1201 tgctgtccgc ctttagccac caagagccta gatttctaat tcccctccta gtccctctag
     1261 tcctgctgtg cagcccacaa gcccaaccta tacccaggaa gggtaccctg gtcctcttca
     1321 atgtctcggg cgcgctcatc tttggctgcc tccatcaggg aggtttggta cctggcctga
     1381 agcacctgga gcaggtggtc cacgcacctg tcctctcagg cacgaccacc cactacacac
     1441 ttctcttcac gcacacctac atgccgcccc agcacctctt acacctctcg ggcctgggat
     1501 cacctgtgga ggtggtagac atgggtgggg ctgaggacag ggtcctgtgt caagccctga
     1561 acaacttcag cagacaagca gcctgtcagc tggctggtgg gccgtggctc tgccggttct
     1621 ttgtggtaac tcctgggacc aacaggcatg ctctggagca gtgccatttt cctctcaaga
     1681 atgaaactct gttgtttccc cacttgacca tggaggaccc tccagccctg tcctccctgc
     1741 tcagtggggc ttggagggag catcttagtc ttcacattat agaactggag aagcctgtta
     1801 tgacagagtg gtccaagatt cagccataga agccactcta ccttctacac aggctggttg
     1861 gctgggacac tggaactccc cccgctgctg tctctttgga ggtatagcca aaggttgttt
     1921 taagtgagcc cacattcctt tcccttagac aaccaaagat ctgaccagtc gtggtcccaa
     1981 tgccaaggtc accaaaataa cctagcataa cccctggcac ctgtcttgtt tctatgctgt
     2041 tattcccgat cactgtaatg tttaaaatat ataatagcac ctggtttgac agac
//
