LOCUS       XM_039086522            4142 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class W (Pigw), transcript variant X1, mRNA.
ACCESSION   XM_039086522
VERSION     XM_039086522.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4142
                     /gene="Pigw"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class W; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 6 ESTs, 2 long SRA reads,
                     5 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 57 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:378774"
                     /db_xref="RGD:727962"
     CDS             137..1654
                     /gene="Pigw"
                     /codon_start=1
                     /product="phosphatidylinositol-glycan biosynthesis class W
                     protein isoform X1"
                     /protein_id="XP_038942450.1"
                     /db_xref="GeneID:378774"
                     /db_xref="RGD:727962"
                     /translation="MEKMSQKQLKEAFVSNLSGTSVLEVTQGLCFPAFCILCRGLLII
                     FSQHLCSFLHTWTTQFFMDFVVLIVPLVITLTVLSSFILLENLTVIVCGAWLLYQIYH
                     RRTCYAKVPVQKVFASFLKISLESEYNPAITCYRVINSVFTAIAILAVDFPLFPRRFA
                     KTELYGTGAMDFGVGGFIFGAAMVCPEVRRKYTEGSRFNHLRKSLYSVWPLVFLGMGR
                     LVIIKSIGYQEHSTEYGVHWNFFFTIIVVKLITSLLLIIFPLNKSWIVAISITVLYQL
                     ALDFTPLKGIILYGTDGRGTRVGLLNANREGIISTLGYVAIYMAGVQTGFYVFKRRAQ
                     VRDWIKATCWVFSVAVGFFISLNIVQVNVEAVSRRMANLAFCLWVVASSLMLLSCLLL
                     SGIVLSFAKFLIKGALVPCSWKLIQSATTNRQSESLIVEAEKNKPSFCLITALNRNQL
                     FFFLLSNVATGLINLTVDTLHTGAFWTLAVLSIYMFANCLVIYVLDLQGKTIKFW"
ORIGIN      
        1 aacttgcagc ccggagagat ggctcagcag ctaaagagcg ctgatgcttt tccagaggac
       61 cccagcaccc acttgactac ttaacaactg taattagctc cagaggattg gacaccctct
      121 tctgacctct gcaggaatgg aaaaaatgtc tcaaaagcag ctgaaggaag cttttgtcag
      181 taacctcagt gggaccagtg ttctggaagt gacccagggc ctgtgctttc ctgcgttctg
      241 tatcctgtgt agaggccttc tgatcatttt ctcacagcat ttgtgctctt tcttgcacac
      301 ctggaccaca caattcttca tggactttgt tgtcttgata gtccccctag tgatcactct
      361 gactgtattg tcttccttta tcctccttga gaatctcact gtgattgtct gtggggcgtg
      421 gctgttgtat cagatatacc acaggaggac ttgctatgcc aaagtacctg tccagaaagt
      481 ctttgcaagc ttcttgaaaa tcagcctaga atcagagtac aatccagcca tcacctgtta
      541 ccgggtcatt aacagtgtat ttactgctat tgccattttg gctgtggatt tcccactttt
      601 ccctagaaga tttgccaaaa ctgaacttta tgggacagga gcaatggatt ttggagtagg
      661 tggctttatt tttggggctg caatggtttg cccagaggtt agaaggaaat atacagaagg
      721 gtctagattt aatcatctta gaaaatcgct gtattctgtc tggccattag tcttcttagg
      781 aatgggaagg ttagtcatta taaaatccat aggctaccag gaacattcaa ctgagtatgg
      841 agttcactgg aattttttct ttaccatcat agttgtgaaa ttaataacat cactgctttt
      901 gattattttt cctttaaata agtcatggat tgtggccatc agcattactg tgttgtacca
      961 gcttgccctt gactttactc cactcaaggg gataattttg tatggcactg atggcagggg
     1021 cacaagagtt ggcttattaa atgctaaccg agagggaata atttccacct tggggtatgt
     1081 ggcaatatac atggctggtg tacaaacagg attttatgtg ttcaagagaa gagcacaggt
     1141 cagagactgg ataaaagcta cttgttgggt attctcggtg gctgttggct tcttcatttc
     1201 tcttaatata gtgcaagtaa acgtagaagc agtatctcga agaatggcca atttagcctt
     1261 ttgtctgtgg gtggttgcct ccagcctgat gctgcttagt tgtctgttac tgagtggtat
     1321 cgttttgagt tttgccaaat ttctaattaa aggggctcta gttccatgtt cttggaaact
     1381 tatacagtct gctactacaa atagacagtc tgaatctcta atcgtagaag ctgaaaagaa
     1441 caaacccagt ttttgtttga tcacagctct gaacagaaac cagttgtttt ttttcttact
     1501 gtcaaatgta gcaactggtc tgattaacct gacggtggat acattacaca ctggtgcctt
     1561 ttggacctta gctgtgctta gtatttatat gtttgccaac tgcttagtta tatatgtact
     1621 tgacttacaa ggtaaaacca taaagttctg gtgataaatg ggtaagaaat atgtatttga
     1681 ttagcattat tttggtggag tagaataagt gtgggggaaa tgtgttctta gcagcctagt
     1741 cttaaccata ttttattatg aagtttcgat cccctatgaa agaaattaaa ctttaccttt
     1801 tttaaggaag actcctgtgc ctgtacctgt acttggatgt ttaacacata tcaacattat
     1861 gtaaaataag ccaacagaag tggtaccaaa ctttaatccc agaaatggga ggaagaggca
     1921 gtcagatctc tctgatttga agccagcctt gtctgcatgt tgagtttcag gacacccaag
     1981 gctatgtgca gggacccttg ggggaaaaaa gagaagcaaa caaagtcttg ttacttattg
     2041 gaacttagaa aacagcagta ttttaaagag cttgttcaca ggattttgct ttgcccagag
     2101 ctcacagttg tactcctacc tcaggctcaa tgctgggatt tcaggcatga gcccccatac
     2161 ccacttgttg gtagtttcga cactggaaga tggatggtgg taatttttac tttctttctt
     2221 tttttttttt ttttaaagat ttatttattt attatatata taagtacact gtagctgtct
     2281 tcagatacac cagaagaggg catcggatct ctttacagat ggttgtgagc caccatgtgg
     2341 ttgctgggaa ttgaactcat gacctctggg agagcagtcg ggtgctctta accgctgagc
     2401 catctctcca gcccctttac tttctatata tcattatcgc actgtatttg tggttgttta
     2461 tatgaatata tgattatgtg attatgtttg tattatatgt ttatattaag atatgaattg
     2521 tcacttaaaa tttttatgtg tatatatagt ttgcctgtat gtatgtctgt gaatcacatg
     2581 tgtgcagtga ccacagaagt cagaagagag ggtggatgcc ctgagactgg aatcacagat
     2641 gattgtgagc tgccatacgg gtgctatgaa ttgaacttgg gtcctctgga ataccagcaa
     2701 gtaagtgctc ttaatcgctc atttttcccg gttccttctt ttagtcggga atctcactgt
     2761 atatcctggc tgacctggaa ctcagtatct cgcctagggt ggcctcaaac tcagattctg
     2821 ccattctgtt ttctgagtgc tggcatcaaa agcacgtact accatgcccg gcaaattgtg
     2881 gatttttcaa ttcatcttta aaaaaatttt ttgtattaga tttattcatt tatttatgtg
     2941 tgttttgtct ttatatatgt gcatcacaag cacgtttggt gtctgaaaag gttggaagag
     3001 catttgttct gaaaactgga gtcaggggtg gttggaaaca accatgtaaa tactggtcct
     3061 gagtgctctt caagagcaac gtgtgcgctt aactgattga gcctcatctc ctgttccctc
     3121 agtacttctt ttatactgac gtttatcttt taagaagcaa gtgtttaaaa ccagatacat
     3181 tccaagccag caaacagtta aatgcaataa atgattgagt tggatgacat agtttatata
     3241 tacgtaataa ttaaaacagg tttttttcag gtacctggta acatttactt tttttcctca
     3301 aagacaaact tttgatacat gatcttatta tgtagcccat atgaacttta aacgctccct
     3361 gtagcccaaa ctggtctgga atttatgatt agtcagtttc agtttctcaa gtactaggat
     3421 tttaagtatg tccccctcag cccagctata caggttttaa gactgattcc ttgttgtcta
     3481 ctctgttcta ggaacaccgt aataaagcac acctaagttt gcaacttata attatagcat
     3541 tcaggaagct gtgacaggag ctagagctca aggctagcct gggctacccc atctcaaaat
     3601 aaaaagataa aacaaatttc tagtatattg gagcttgcga tttagtgagg gaaaacatat
     3661 taagctaata gaatactaag tcataggaaa aataaaacac ctatggtttg ttacagatgt
     3721 gaaactaata accaatctgg gaagaaacaa aagttttctc cataaatggg catttttaag
     3781 gcaattctga agctgatgga tgatacatgt atctggggaa gagggtagaa gagtagatgg
     3841 cagagaatat tcaatgtgtg atgaatctgt caagaaaagt tgggagggaa tctaggtaac
     3901 tcaaaaaaaa gtgtgggcta taagctggag aaagggacaa ggcagcctta atcatgggaa
     3961 agagaatcaa gaaaatcagt gagaaaaaaa acgaaagtac ttagactaat agaactggtt
     4021 acattaaggc ttagttgtct actgagaact ggaatcattt aaaagctgtt aagtctaaag
     4081 atttaaaaaa atcactagat ctttagttta ccattctgat gtcttttttt tttttttttt
     4141 tt
//
