LOCUS       XM_039110479            2217 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class V (Pigv), transcript variant X3, mRNA.
ACCESSION   XM_039110479
VERSION     XM_039110479.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110479.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2217
                     /gene="Pigv"
                     /gene_synonym="RGD1309526"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class V; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 28 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:366478"
                     /db_xref="RGD:1309526"
     CDS             180..1658
                     /gene="Pigv"
                     /gene_synonym="RGD1309526"
                     /codon_start=1
                     /product="GPI mannosyltransferase 2 isoform X1"
                     /protein_id="XP_038966407.1"
                     /db_xref="GeneID:366478"
                     /db_xref="RGD:1309526"
                     /translation="MGLLDPSQKEVLKFAVSCRILTLVLQALFNIIIPDHHADAFSPP
                     RLAPSGSVDQLVEALLGGLSRWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLMGTELL
                     RPLQGLLSERSCLLVSVALLNSLFSVLAAVALHDLGCLVLHCPRQAFCAALLFCLSPA
                     NVFLAAGYSEALFAFLTFSAMGQLERGRGWASGLLFALAAGVRSNGLVSVGFLLHSQC
                     RGFCSSLVVLDPLKGLVKLMASLCLSVLTVSLPFALFQYYAYTQFCFPGSAHAIPEPL
                     LRLASDRGYRLAGDYEPPWCSRAPPLIYSYIQDVYWNVGLLRYYELRQVPNFLLATPV
                     TVLVVWATWTYVTAHPWLCLTLGLQRTKDRESLEKPHPGFLSAKVFVYLVHAAALLAF
                     GGLCMHVQVLTRLLGSSTPITYWFPAYLLQDREPLLRCVDTAPQKLLENSPPGQKAPR
                     NCVMKLLYNWKTCSPVTKCILVYFLTYWLLGLIMHCNFLPWT"
ORIGIN      
        1 accggcgccg cctcttcctt tgcggcctcc ggccctcgtc tgcttccggc cctgttgcct
       61 ggcccggccc cgccgttccc taggggcgaa gccctgggcc gcggctccct tggggtgagg
      121 gtcactaccc cttcccggaa tttggaagcc agaggaagct cagtcctgat ggtgtgagga
      181 tggggctcct ggacccgtcc cagaaagagg tgctgaaatt tgcagtgagc tgccgcatcc
      241 tgactctagt gctacaggca ctcttcaata tcatcatccc agaccaccat gccgatgcct
      301 tttctcctcc ccgcctcgcc ccctcgggct ctgtggatca gcttgtggaa gctcttctgg
      361 gtggtctgtc tcgatgggat gctgaacact tcctgtttat tgctgagcac ggctaccttt
      421 atgagcacaa ctttgccttc ttccctggct tccccttggc cctgctgatg ggaactgaac
      481 tgctgaggcc cctgcagggc ctcttgagcg agcgcagttg cctgctggtc tcagtagcac
      541 ttctcaactc cctgttctct gtgctggccg cagttgcact tcatgacttg ggctgtctgg
      601 ttttgcactg tcctcgccag gccttttgtg cggcactgct cttctgcctc agccctgcca
      661 atgttttctt ggcagctggt tactcggaag ctttgtttgc cttcctgaca ttcagtgcca
      721 tggggcagct ggagaggggc cgaggctggg ctagtgggct gctctttgct cttgccgctg
      781 gggtgcgctc caacgggctg gtcagcgttg gcttcctcct gcattctcag tgcagaggct
      841 tttgttcttc tctggtggtg ctggacccct tgaaagggct ggtcaagctc atggcctctc
      901 tgtgcttgtc agtactcaca gtcagccttc cttttgccct ctttcagtat tatgcctaca
      961 cccagttctg tttcccaggc tcagcccatg ccatccctga gcccttgctg cggctagctt
     1021 cggacagagg ctaccggctt gcaggagact atgagccccc atggtgctcc cgggctcctc
     1081 cactaatata cagctatatt caggatgtct actggaacgt tggtcttctg cgatactatg
     1141 agctcagaca ggtgccgaat tttctcctag ctacaccagt gactgtactg gttgtgtggg
     1201 caacctggac gtatgtgacc gcccaccctt ggctctgcct tacccttggg ctgcaaagga
     1261 ccaaggacag ggagagcctg gagaagcccc atcctggctt cctcagtgca aaggtgtttg
     1321 tgtacctggt ccacgcggca gcgctgctgg cctttggagg tctgtgcatg catgtccagg
     1381 ttctcacgcg acttctgggc tcttccactc ccatcacata ctggtttcca gcttacctgc
     1441 ttcaggatcg agaaccactg ttaagatgtg tagacacagc ccctcagaag cttcttgaga
     1501 attccccacc aggacaaaag gcccccagaa actgtgtcat gaaactctta tacaactgga
     1561 agacctgctc tccagtcaca aaatgcatcc tagtctactt cctgacctac tggctcctgg
     1621 gactaattat gcattgcaac ttcctgcctt ggacttgacc tggaatctca gggcaagctg
     1681 gaagctaatt taagcctggg tctgaaagct gtaagacacc ccaactagga ctgcctggac
     1741 actcctggag cactgtccag tgggatttcc ccatgtctct ctggaggcca gttaagaagg
     1801 gaaaatggga gcctctcatc ctgggcgggg tgaatttagg ggagtaactt cgctgctcag
     1861 tagatctgtc tcaaatcttc ctggtcaaca agtatgaggc aatcttgaac ctacctctga
     1921 tccatgtgta agtcttcatc tttttgtttt tccatagagg gtttctctgc gtagccctgg
     1981 cgtcttggaa ctcactctgt aaaccagatt tgtgcagacc aggctaacct ggaactcaag
     2041 agatccacct gcttctgcct cctgagtgct aggattaaag ccatgagcca ccactgcctg
     2101 gcctggtggg taaatttaaa tgtttgctca aatcacaggc aacagcctag tccattcatg
     2161 acgatggaga tagtgcaatg taatgactga aggaaaaagg aactgcctgc tctaaaa
//
