LOCUS       NM_181637               1602 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class U (Pigu), mRNA.
ACCESSION   NM_181637
VERSION     NM_181637.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Guo,Z., Linn,J.F., Wu,G., Anzick,S.L., Eisenberger,C.F.,
            Halachmi,S., Cohen,Y., Fomenkov,A., Hoque,M.O., Okami,K.,
            Steiner,G., Engles,J.M., Osada,M., Moon,C., Ratovitski,E.,
            Trent,J.M., Meltzer,P.S., Westra,W.H., Kiemeney,L.A.,
            Schoenberg,M.P., Sidransky,D. and Trink,B.
  TITLE     CDC91L1 (PIG-U) is a newly discovered oncogene in human bladder
            cancer
  JOURNAL   Nat Med 10 (4), 374-381 (2004)
   PUBMED   15034568
  REMARK    Erratum:[Nat Med. 2004 Oct;10(10):1139]
REFERENCE   3  (bases 1 to 1602)
  AUTHORS   Hong,Y., Ohishi,K., Kang,J.Y., Tanaka,S., Inoue,N., Nishimura,J.,
            Maeda,Y. and Kinoshita,T.
  TITLE     Human PIG-U and yeast Cdc91p are the fifth subunit of GPI
            transamidase that attaches GPI-anchors to proteins
  JOURNAL   Mol Biol Cell 14 (5), 1780-1789 (2003)
   PUBMED   12802054
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 27, 2020 this sequence version replaced NM_181637.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            35 bp suspected to be vector contamination from the 5' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB086841.1, SRR22399489.911707.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMN11044071 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               JAXUCZ010000003.1  164317264-164317393 c
            131-195             JAXUCZ010000003.1  164307211-164307275 c
            196-255             JAXUCZ010000003.1  164297081-164297140 c
            256-318             JAXUCZ010000003.1  164295657-164295719 c
            319-428             JAXUCZ010000003.1  164291942-164292051 c
            429-529             JAXUCZ010000003.1  164288835-164288935 c
            530-627             JAXUCZ010000003.1  164274958-164275055 c
            628-782             JAXUCZ010000003.1  164264807-164264961 c
            783-926             JAXUCZ010000003.1  164262546-164262689 c
            927-1051            JAXUCZ010000003.1  164260563-164260687 c
            1052-1194           JAXUCZ010000003.1  164256523-164256665 c
            1195-1602           JAXUCZ010000003.1  164245011-164245418 c
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1602
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class U"
                     /db_xref="GeneID:353304"
                     /db_xref="RGD:727825"
     CDS             1..1308
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /note="protein CDC91-like 1; GPI transamidase component
                     PIG-U; cell division cycle protein 91-like 1; liver
                     regeneration-related protein LRRGT00059; CDC91 cell
                     division cycle 91-like 1"
                     /codon_start=1
                     /product="phosphatidylinositol glycan anchor biosynthesis
                     class U protein"
                     /protein_id="NP_853668.1"
                     /db_xref="GeneID:353304"
                     /db_xref="RGD:727825"
                     /translation="MAAPLALVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRV
                     VEGLALLDLGVSPYSGAVFHETPLIIYLFHFLIDYAELVFMITDALTAIALYFAIQDF
                     NKVVFKKQKLLLELDQYAPDVAELIRTPMEMRYIPLKVALFYLLNPYTILSCVAKSTC
                     AINNTLIAFFILTTIKGSVFLSAIFLALATYQSLYPITLFAPGLLYLLQRQYIPVKVK
                     SKAFWIFSWEYAMMYTGSLVVIVCLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWY
                     FFAEMFEHFSLFFVCVFQINVFFYTVPLAIKLKEHPIFFMFIQIAIISIFKSYPTVGD
                     VALYMAFFPVWSHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITL
                     TFNVGQILLISDYFYAFLRREYYLTHGLYLTAKDGTEAMLVLK"
     exon            1..130
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            131..195
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            196..255
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            256..318
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            319..428
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            429..529
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            530..627
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            628..782
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            783..926
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1051
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1194
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1602
                     /gene="Pigu"
                     /gene_synonym="Cdc91l1; LRRGT00059; sakura"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggctc ccttggccct ggtgcttgtg gtggccgtga ctgtgagggc ggccttgttt
       61 cgttccagtt tggccgagtt catttccgag agggtggagg tggtgtctcc attgagctct
      121 tggaagagag tggttgaagg ccttgcactg ttggatctgg gagtatctcc gtattctgga
      181 gcagtatttc atgaaactcc attaataata tacctctttc atttcctaat tgactatgca
      241 gaattggtat ttatgataac agatgccctc actgctattg ccctgtattt tgcaattcag
      301 gacttcaata aagttgtgtt taaaaagcag aaacttctcc tagagctgga ccagtatgcc
      361 ccagatgtgg ccgaactcat ccggacacct atggaaatgc gctacatccc tctgaaagtg
      421 gccctgttct atctcctgaa tccctacacg atcttgtctt gtgttgccaa gtctacctgc
      481 gccatcaaca acaccctcat tgctttcttc attttgacca caataaaagg cagcgttttc
      541 ctcagtgcta tttttcttgc cttagcaaca taccagtctc tgtacccaat caccttgttt
      601 gccccaggac ttctctatct cctccagcgg cagtacatcc ctgttaaagt gaagagcaaa
      661 gccttctgga tcttctcttg ggagtatgcc atgatgtaca caggaagcct agtggtaata
      721 gtttgcctct ccttcttcct tctcagctcc tgggatttca tccctgcagt ctacggtttc
      781 atactttctg ttccagatct cactccaaac atcggtcttt tctggtactt ctttgcagag
      841 atgtttgagc acttcagcct cttttttgtc tgcgtgtttc agatcaacgt cttcttctac
      901 acagttccct tagccatcaa gttaaaggag caccccatct tcttcatgtt cattcagatt
      961 gccatcatct ctatcttcaa gtcctatcca accgtgggcg atgtggccct ctacatggct
     1021 ttcttccctg tgtggagcca tctctacaga ttcctacgga acatcttcgt cctcacctgc
     1081 atcatcattg tctgctctct tctcttccct gtcctgtggc acctatggat ttacgcagga
     1141 agtgccaact ctaacttctt ttatgccatc acactgacct tcaatgttgg gcagatcctg
     1201 ctcatctctg actacttcta cgccttcctg cgacgggagt attacctcac gcatggtctc
     1261 tacttgactg ccaaggacgg cactgaggcc atgcttgtgc tcaagtagcc ctgctggcac
     1321 agagctgcat ggacaagagg gggaagggcc agagctgggc caggtccctc atccggagtt
     1381 gccagcaggc gagtcctcag gcagaagacg ttcaagtcca gggctccaaa cctctggcac
     1441 caaaggggac tcgtagctgg caacaaggcc catggggaga agctaggagc accccacttg
     1501 gacccccact ttgtgactgt gcatagaaag gaaggggagc agccagtgag cagggcttta
     1561 taggttgtga ctacttaata aatgtgtggg tcttcttttt ca
//
