LOCUS       XM_039104629            2249 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class T (Pigt), transcript variant X1, mRNA.
ACCESSION   XM_039104629
VERSION     XM_039104629.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2249
                     /gene="Pigt"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class T; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 43 ESTs, 6 long SRA reads, 1
                     Protein, and 96% coverage of the annotated genomic feature
                     by RNAseq alignments, including 243 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:296360"
                     /db_xref="RGD:1307156"
     CDS             47..1882
                     /gene="Pigt"
                     /codon_start=1
                     /product="GPI transamidase component PIG-T isoform X1"
                     /protein_id="XP_038960557.1"
                     /db_xref="GeneID:296360"
                     /db_xref="RGD:1307156"
                     /translation="MAAAMPLGLSLLLLVLVGQGCCGRVEGPRDSLREELVITPLPSG
                     DVAATFQFRTRWDSDLQREGVSHYRLFPKALGQLISKYSLRELHLSFTQGFWRTRYWG
                     PPFLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCASLNFIDSTNTVTPTASFK
                     PLGLANDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYH
                     SQAVHIRPICRNAHCTSISWELRQTLSVVFDAFITGQGKKDWSLFRMFSRTLTEACPL
                     ASQSLVYVDITGYSQDNETLEVSPPPTSTYQDVILGTRKTYAVYDLFDTAMINNSRNL
                     NIQLKWKRPPDNEALPVPFLHAQRYVSGYGLQKGELSTLLYNSHPYRAFPVLLLDAVP
                     WYLRLYVHTLTITSKGKDNKPSYIHYQPAQDRQQPHLLEMLIQLPANSVTKVSIQFER
                     ALLKWTEYTPDPNHGFYVRWDLPQLTAPLLPLTLWWEELVKNMAICLLCSPSVLSALV
                     PSMVAAKPVDWEESPLFNTLFPVSDGSSYFVRLYTEPLLVNLPTPDFSMPYNVICLTC
                     TVVAVCYGSFYNLLTRTFHIEEPKSGGLAKRLANLIRRARGVPPL"
ORIGIN      
        1 ctttagtggg cgcaggcgct gctgggaggc ggaagcagcc gcaggtatgg cggctgccat
       61 gccgctgggt ttatcgttgc tgttgctggt gctagtgggg cagggctgct gtggccgcgt
      121 ggagggccca cgcgacagcc tgcgagagga actcgttatc actccgctgc cttccggcga
      181 cgtggccgcc acattccagt tccgcacgcg ttgggattcc gatctgcagc gggaaggagt
      241 gtcccattac aggctcttcc ctaaagccct gggacagttg atctccaagt actctctgcg
      301 ggagctacac ctgtcattca cgcaaggctt ttggaggacc cgatactggg ggccaccctt
      361 cctgcaggct ccatcaggtg cagagctctg ggtctggttc caagacactg tcacagatgt
      421 ggataagtct tggaaggagc tcagtaatgt cctctcaggg atcttctgcg cgtccctcaa
      481 cttcatcgac tccaccaata ccgtcactcc cacagcctcc ttcaaacctc tggggctggc
      541 caatgacact gaccactact tcctgcgcta tgctgtgctg ccccgggagg tcgtctgcac
      601 cgagaatctc acgccgtgga agaagctcct gccctgtagc tccaaggcag ggctgtccgt
      661 gctactgaaa gcagatcgat tgttccacac cagttaccac tcccaggcag tgcatatccg
      721 gccaatctgc agaaatgctc actgcaccag tatctcctgg gagctgaggc agaccctttc
      781 agttgtcttt gatgccttca tcaccggaca ggggaagaaa gactggtccc tcttccgcat
      841 gttctcccgg actctcacag aggcctgtcc attggcatct cagagcctag tttatgtgga
      901 catcacaggc tacagccagg acaacgaaac actggaggtg agccctcccc caacttccac
      961 ataccaggat gtcattttgg gcaccaggaa gacctatgcc gtctatgact tgtttgacac
     1021 agccatgatc aataactccc gaaacctcaa catccagctc aaatggaaga gacccccaga
     1081 taatgaagcc ctgcccgtgc ccttcctgca tgcacagcgg tacgtgagtg gttatgggct
     1141 acagaagggc gagctgagca ccctgttgta caactctcat ccttaccggg ccttccctgt
     1201 gctgctactg gatgctgtgc cctggtacct gcggctgtat gtgcacaccc tcaccatcac
     1261 ctccaagggc aaggataata aaccaagtta tatccactac cagcctgccc aggaccggca
     1321 gcagccccac ctcctggaga tgctcattca gctgccggcc aactccgtca ccaaggtctc
     1381 catccagttt gaacgagccc tgctcaagtg gacagaatac acgccagacc ccaaccatgg
     1441 cttctatgtc aggtgggatc taccccagtt aactgccccg cttctacctc ttaccctttg
     1501 gtgggaggag ctagtgaaga acatggccat ctgtctactc tgcagcccat ctgtcctcag
     1561 tgcccttgtg cccagcatgg tggcagccaa accagtggac tgggaagaga gccctctctt
     1621 caacaccttg ttcccggtgt ctgatggctc cagctacttt gtccgactct acacagagcc
     1681 cttgctagtg aacctgccca cccccgactt cagcatgccc tacaatgtga tctgccttac
     1741 atgcactgtg gtggccgtgt gctatggctc cttctacaat ctcctcaccc gaaccttcca
     1801 cattgaagag cccaaatccg gcggcctggc caagcggctg gctaacctca tccggcgtgc
     1861 tcgtggtgtt ccccctctct aagattccct ttcttcagca actacagctt catactcacc
     1921 tgccccaggg gagcagtggc agggcttttt ctgccatgcc ctctttcccc agagttagct
     1981 tctgaagcta actccccctg gatctggtct gggctaaggt atggtttcca ttgtggtaga
     2041 cttgagccaa atcccgtctt ccctcctcac ctgtggcagc cacatgtcta cctagaaggg
     2101 gccggtgctg ctgtatactg gacagcctag agagatgcct ccgtcattac aggacattct
     2161 gctggcccag gtaatggggt gcagtagagc ttgtggtact gtgggagggg cgctgaattt
     2221 actggtgtaa taaaatgcct accctccta
//
