LOCUS       NM_001106540            2141 bp    mRNA    linear   ROD 10-MAY-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class T (Pigt), transcript variant 1, mRNA.
ACCESSION   NM_001106540 XM_001070371 XM_215919
VERSION     NM_001106540.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Li,H.L., Li,Z., Qin,L.Y., Liu,S., Lau,L.T., Han,J.S. and Yu,A.C.
  TITLE     The novel neurotrophin-regulated neuronal development-associated
            protein, NDAP, mediates apoptosis
  JOURNAL   FEBS Lett 580 (7), 1723-1728 (2006)
   PUBMED   16516892
REFERENCE   3  (bases 1 to 2141)
  AUTHORS   Ohishi,K., Inoue,N. and Kinoshita,T.
  TITLE     PIG-S and PIG-T, essential for GPI anchor attachment to proteins,
            form a complex with GAA1 and GPI8
  JOURNAL   EMBO J 20 (15), 4088-4098 (2001)
   PUBMED   11483512
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474005.2.
            
            On Jan 12, 2008 this sequence version replaced NM_001106540.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2141
                     /gene="Pigt"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class T"
                     /db_xref="GeneID:296360"
                     /db_xref="RGD:1307156"
     exon            1..225
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..1775
                     /gene="Pigt"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; phosphatidylinositol glycan, class T; GPI
                     transamidase component PIG-T"
                     /codon_start=1
                     /product="GPI transamidase component PIG-T isoform 1
                     precursor"
                     /protein_id="NP_001100010.2"
                     /db_xref="GeneID:296360"
                     /db_xref="RGD:1307156"
                     /translation="MAAAMPLGLSLLLLVLVGQGCCGRVEGPRDSLREELVITPLPSG
                     DVAATFQFRTRWDSDLQREGVSHYRLFPKALGQLISKYSLRELHLSFTQGFWRTRYWG
                     PPFLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCASLNFIDSTNTVTPTASFK
                     PLGLANDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYH
                     SQAVHIRPICRNAHCTSISWELRQTLSVVFDAFITGQGKKDWSLFRMFSRTLTEACPL
                     ASQSLVYVDITGYSQDNETLEVSPPPTSTYQDVILGTRKTYAVYDLFDTAMINNSRNL
                     NIQLKWKRPPDNEALPVPFLHAQRYVSGYGLQKGELSTLLYNSHPYRAFPVLLLDAVP
                     WYLRLYVHTLTITSKGKDNKPSYIHYQPAQDRQQPHLLEMLIQLPANSVTKVSIQFER
                     ALLKWTEYTPDPNHGFYVSPSVLSALVPSMVAAKPVDWEESPLFNTLFPVSDGSSYFV
                     RLYTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPKSGGLAKR
                     LANLIRRARGVPPL"
     exon            226..403
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            404..531
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            532..632
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            633..719
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            720..807
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            808..905
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1071
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1272
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1438
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1522
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
     exon            1523..2141
                     /gene="Pigt"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgctgctg ggaggcggaa gcagccgcag gtatggcggc tgccatgccg ctgggtttat
       61 cgttgctgtt gctggtgcta gtggggcagg gctgctgtgg ccgcgtggag ggcccacgcg
      121 acagcctgcg agaggaactc gttatcactc cgctgccttc cggcgacgtg gccgccacat
      181 tccagttccg cacgcgttgg gattccgatc tgcagcggga aggagtgtcc cattacaggc
      241 tcttccctaa agccctggga cagttgatct ccaagtactc tctgcgggag ctacacctgt
      301 cattcacgca aggcttttgg aggacccgat actgggggcc acccttcctg caggctccat
      361 caggtgcaga gctctgggtc tggttccaag acactgtcac agatgtggat aagtcttgga
      421 aggagctcag taatgtcctc tcagggatct tctgcgcgtc cctcaacttc atcgactcca
      481 ccaataccgt cactcccaca gcctccttca aacctctggg gctggccaat gacactgacc
      541 actacttcct gcgctatgct gtgctgcccc gggaggtcgt ctgcaccgag aatctcacgc
      601 cgtggaagaa gctcctgccc tgtagctcca aggcagggct gtccgtgcta ctgaaagcag
      661 atcgattgtt ccacaccagt taccactccc aggcagtgca tatccggcca atctgcagaa
      721 atgctcactg caccagtatc tcctgggagc tgaggcagac cctttcagtt gtctttgatg
      781 ccttcatcac cggacagggg aagaaagact ggtccctctt ccgcatgttc tcccggactc
      841 tcacagaggc ctgtccattg gcatctcaga gcctagttta tgtggacatc acaggctaca
      901 gccaggacaa cgaaacactg gaggtgagcc ctcccccaac ttccacatac caggatgtca
      961 ttttgggcac caggaagacc tatgccgtct atgacttgtt tgacacagcc atgatcaata
     1021 actcccgaaa cctcaacatc cagctcaaat ggaagagacc cccagataat gaagccctgc
     1081 ccgtgccctt cctgcatgca cagcggtacg tgagtggtta tgggctacag aagggcgagc
     1141 tgagcaccct gttgtacaac tctcatcctt accgggcctt ccctgtgctg ctactggatg
     1201 ctgtgccctg gtacctgcgg ctgtatgtgc acaccctcac catcacctcc aagggcaagg
     1261 ataataaacc aagttatatc cactaccagc ctgcccagga ccggcagcag ccccacctcc
     1321 tggagatgct cattcagctg ccggccaact ccgtcaccaa ggtctccatc cagtttgaac
     1381 gagccctgct caagtggaca gaatacacgc cagaccccaa ccatggcttc tatgtcagcc
     1441 catctgtcct cagtgccctt gtgcccagca tggtggcagc caaaccagtg gactgggaag
     1501 agagccctct cttcaacacc ttgttcccgg tgtctgatgg ctccagctac tttgtccgac
     1561 tctacacaga gcccttgcta gtgaacctgc ccacccccga cttcagcatg ccctacaatg
     1621 tgatctgcct tacatgcact gtggtggccg tgtgctatgg ctccttctac aatctcctca
     1681 cccgaacctt ccacattgaa gagcccaaat ccggcggcct ggccaagcgg ctggctaacc
     1741 tcatccggcg tgctcgtggt gttccccctc tctaagattc cctttcttca gcaactacag
     1801 cttcatactc acctgcccca ggggagcagt ggcagggctt tttctgccat gccctctttc
     1861 cccagagtta gcttctgaag ctaactcccc ctggatctgg tctgggctaa ggtatggttt
     1921 ccattgtggt agacttgagc caaatcccgt cttccctcct cacctgtggc agccacatgt
     1981 ctacctagaa ggggccggtg ctgctgtata ctggacagcc tagagagatg cctccgtcat
     2041 tacaggacat tctgctggcc caggtaatgg ggtgcagtag agcttgtggt actgtgggag
     2101 gggcgctgaa tttactggtg taataaaatg cctaccctcc t
//
