LOCUS       NM_001006602            2436 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class S (Pigs), mRNA.
ACCESSION   NM_001006602 XM_220633
VERSION     NM_001006602.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2436)
  AUTHORS   Ohishi,K., Inoue,N. and Kinoshita,T.
  TITLE     PIG-S and PIG-T, essential for GPI anchor attachment to proteins,
            form a complex with GAA1 and GPI8
  JOURNAL   EMBO J 20 (15), 4088-4098 (2001)
   PUBMED   11483512
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083862.1.
            
            On Oct 29, 2004 this sequence version replaced XM_220633.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083862.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..2436
                     /gene="Pigs"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class S"
                     /db_xref="GeneID:303277"
                     /db_xref="RGD:1359436"
     exon            1..40
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..1674
                     /gene="Pigs"
                     /note="phosphatidylinositol-glycan biosynthesis class S
                     protein; phosphatidylinositol glycan, class S"
                     /codon_start=1
                     /product="GPI transamidase component PIG-S"
                     /protein_id="NP_001006602.1"
                     /db_xref="GeneID:303277"
                     /db_xref="RGD:1359436"
                     /translation="MATAGAAATDLEVVRGKRAALFFAAVAILLGLPLWWKTTETYRA
                     PLPYSEISGLNALQLRLMVPVTVVFTRDSVPLDDQEKLPFTVVHEREIPLKYKMKIKC
                     RFQKAYRRALEHEEEALSLGSVHEAEALLAEPEKQAEGSLTVYVISEHSSLLPQDMMS
                     YIGPERTAIVRGMIHREAFNIIGRRIIHVAQAMSLTEDVLAAALADHLPEDKWSSDKR
                     RPLKSSLGYEITFSLLNPDPKSHDVHWDIEEGVQRYVQPFLNRLSAAGNFSVDSQILY
                     YAMLGVNPRFDPASSSYSLAMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHS
                     PLYIQDKDGAPVATNAFHSPRWGGIMVYNVDPKIYNASELPVRVEVDMAQVMEVFLAQ
                     LRLLFGIAQPQVPPKCLLSGPKSEGLMTWELDRLLWARSVENLATATTTLTSLAQLLG
                     KISNIVIKDDVASEVYRAVAAVQKAAEALALGHLSSAFAASQEAVTSSERAFFDPSLL
                     HLLYFPDDQKFAIYIPLFLPMAVPILLSLVKIFLETHKSWKKPEKID"
     exon            41..180
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            181..292
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            293..382
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            383..474
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            475..682
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            683..825
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            826..940
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1086
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1187
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1398
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..2409
                     /gene="Pigs"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagcatgg cgaccgcggg agctgcggcc acagacctag aggtggtccg aggcaagcgt
       61 gcagcgcttt tcttcgccgc ggtggccatc cttctgggac tgcctctctg gtggaagacg
      121 acggagacct accgtgcccc gttgccttac tcagagatca gtggactgaa tgctctgcag
      181 ctccggctca tggtgccagt cacagttgtg tttacgagag actctgtgcc cctggacgac
      241 caggagaagc tacccttcac cgttgtgcat gagcgagaga tccctctgaa atacaaaatg
      301 aaaatcaagt gtcgattcca gaaggcctac cggagagctt tggaacacga ggaggaggca
      361 ctgtcactgg gcagtgtgca tgaggccgaa gccttgttag ctgagccgga gaagcaagca
      421 gagggctccc tgactgtgta cgtgatctcg gaacactcct cccttcttcc tcaggacatg
      481 atgagctaca tcgggcccga gaggacggcc atcgtacggg gcatgatcca ccgggaagcc
      541 ttcaacatca ttggccgtcg cataatccac gtggcccagg ccatgtcttt gacagaggat
      601 gtgcttgctg ctgctctggc cgaccacctc cctgaggaca agtggagctc tgataagagg
      661 cggccactca agtccagcct aggctatgaa atcactttca gtttactcaa cccagacccc
      721 aagtcccatg atgtccactg ggacattgag gagggtgtcc aacgctatgt gcagcctttc
      781 ttgaaccgcc tcagcgctgc aggcaatttc tctgtggact ctcagatcct ttactacgcc
      841 atgttgggag tgaacccccg ctttgaccct gcctcatcca gctactcctt ggctatgcac
      901 agcctccccc atgtcatcaa cccagtggag tcccggctgg ggtccagtgc tgcctccctg
      961 taccctgtgc tcaatttttt actctatgtg cccgagctcg ctcactcccc cctctacatt
     1021 caggacaagg atggagctcc agtggccacc aatgccttcc acagtccccg ctggggtggc
     1081 attatggtat acaatgttga tcctaaaatc tataatgctt cggagctgcc agtgagagtt
     1141 gaggtggaca tggcacaggt gatggaggtg ttcctggctc agctgaggct gctctttggg
     1201 attgctcagc cccaggtgcc tccaaaatgc ctgctttcag gaccgaagag tgaaggactc
     1261 atgacctggg agctggaccg attgctctgg gctcgctcag tggagaacct ggccacagcc
     1321 accactaccc tcacctccct ggcccagctt ctgggcaaga tcagcaacat tgtcatcaag
     1381 gatgatgtgg cttctgaggt atatagggct gtggctgcag tccagaaggc ggcagaggca
     1441 ttagcccttg ggcacttgtc atccgccttt gctgccagcc aggaagccgt gacctcctcc
     1501 gagcgtgcct tttttgatcc ttcactcctc cacctcttgt atttccccga cgaccagaag
     1561 tttgctatct acatccccct tttcctgccg atggctgtgc ccatcctcct gtctctggtc
     1621 aagatctttc tggaaactca caaatcctgg aaaaagcctg agaagataga ttgatccagg
     1681 cagcatgtca gaaggagccc tcctctctag ccacgcgaga ggccaaggcg agaacccaag
     1741 gcgagaaccg ctggggatgt cacccatggg ctctctacgg atgccactcc tcaagggctc
     1801 atcttccctc accttcctac tccactgact tgatcctcca cgcctgctca gaaagcgctc
     1861 tgctgggtct ccatgtctgg ctggaacttc aaagcctttg cctgccaacc tctggacagg
     1921 agtaccttgt ccttccagtc tgtcagcact gcatacttat gcagagaggt gaatttaggg
     1981 gaatccttgg gttgaattgt agccccatcc tctccacttc tgagaccgtc tccctccttc
     2041 ctcagcttcc tgattggtgt caccattggg gacagcctgg tttaggaggc agtggcttag
     2101 gacctgcttc ttctgcctgt ggctaaggtt cccctctacc gtttcagagg tagtgtggaa
     2161 caggagaaaa catttctgac ttggaaccca acaggcctga atcagattcc ggcttctgca
     2221 cttaacggac tggagagtgc ttgataagct gctcctcact gagcctcagg ttttcctctg
     2281 tgagaaagca ctatgatgtc accctcagaa gggggttgga ttaaatgtaa taagtgtgta
     2341 aaagtgttct gtatattggg ctctttagaa atatacatta ggccatcaat aaacattggt
     2401 tgaatatgaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
