LOCUS       XM_006248042             580 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class P (Pigp), transcript variant X1, mRNA.
ACCESSION   XM_006248042
VERSION     XM_006248042.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248042.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248042.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..580
                     /gene="Pigp"
                     /gene_synonym="Dscr5"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class P; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 ESTs, 9 long SRA reads, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 247 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:288238"
                     /db_xref="RGD:1307205"
     CDS             42..545
                     /gene="Pigp"
                     /gene_synonym="Dscr5"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit P isoform X1"
                     /protein_id="XP_006248104.1"
                     /db_xref="GeneID:288238"
                     /db_xref="RGD:1307205"
                     /translation="MRLCNRPMVKGDGGEEGCLTTTVFLLHRLSKATGKMVENSPSPL
                     PERAIYGFVLFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPVYLLITVV
                     IGYVLLFGINMMSTSPLDSIHTITDNYAKNQQRKSYQEDAIPALRDIPISEVNRMFFL
                     DAKELNT"
ORIGIN      
        1 gcgcgtgtga gcatccgcag tggctatgtc cgcagcaagt gatgagatta tgtaacagac
       61 caatggtgaa gggagatggg ggggaggagg gatgtctgac gacgactgtg ttccttctcc
      121 acagattgtc taaagccaca gggaagatgg tggaaaattc accgtcgcca ttgccagaaa
      181 gagcgattta tggctttgtt cttttcctaa gctctcagtt tggcttcata ctctatcttg
      241 tgtgggcttt cgttcccgaa tcttggctaa actccttagg cttaacttac tggcctcaaa
      301 agtactgggc agttgcgttg cctgtctatc tcttgatcac ggttgtaatt ggttacgtgc
      361 tcttatttgg aatcaacatg atgagtacct ctccacttga ctccatccat acgatcacag
      421 ataactatgc taaaaaccaa cagaggaaaa gctaccaaga ggacgccatc ccagcattaa
      481 gagacattcc cattagtgaa gtcaacagaa tgttcttcct agacgccaaa gaactcaaca
      541 cctaaaactg agctgtgaat aaacatccta aaaccaacca
//
