LOCUS       XM_039110984            2939 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class O (Pigo), transcript variant X6, mRNA.
ACCESSION   XM_039110984
VERSION     XM_039110984.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110984.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2939
                     /gene="Pigo"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class O; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
     CDS             192..2678
                     /gene="Pigo"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 3 isoform
                     X4"
                     /protein_id="XP_038966912.1"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
                     /translation="MTMNGDHGGDSELEVSAALFLYSPTVLFPSVPPEEPEVIPQISL
                     VPTLALLLGLPIPFGNIGEVMAELFSGGSGGGSSRGDGDASHPDSPALAQVSALYINA
                     QQVSRFLHTYSAATQDLHVKELRRLQELFSKASARYQHLLQHPREAEAALSSLTADFQ
                     QFLRGARAVCIESWARFSLVRMAGGAALLAAACLLCLLASQLAVAPGFLFRPLLLIPV
                     AWGLTWTLLYAGVSVTTGSKLDPVVLGAVAAAGSLLPFLWKAWLSWGSKRPLAPLLPV
                     PRPVLALLLIRLATFFSDSFVVAEARATPFLLGSLILFLVAQLHWEGQLLPPKLLTTS
                     RLGSSAPTAPPRHSGTHALLLGIGLLLFTRLAGLFHRCPEETPACRSSPWLSPLASMV
                     GGRAKNLWYGACVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLPLMVLGTAAYW
                     ALASGAEEVPPRLRALVAGASAVLPRAVMGLAASGLMLLLWRPVTVLVKAGAATSRTR
                     TILTPFSGPPTSQADLDYVVPQIYRHMQEEFQGRLERTRAQGPITVAAYQLGSVYSAA
                     MVTALILLAFPLLLLHVERVSLVFLLLFLQSFLLLHLLAAGTPVATPGPFTVMWQAVS
                     AWVLLATQTFYSTGHQPVFSAIHWHAAFVGFPDGHGSSTWLPALLVGANTFASHLLFA
                     ALSSPEAVGCPLLLLWPFLCERQGPKKRQSLPGSESEARVRPEEEQEEPLMEMRLRDA
                     PHHFNAALLQLGLKYLFVLGAQILACALAASILRRHLMVWKVFAPKFIFEAIGFIVSS
                     VGLLLGIALVMRVDGAVSSWFKKLVLAQQR"
ORIGIN      
        1 ccccccacaa ccaccatgca gcgtctgaag gctctcacca ctggctcgct gccgactttt
       61 attgatgccg gcagtaactt cgccagccat gctattgtgg aagataatct catcaagcag
      121 ctcaccagtg caggggtctg atagaacgcc tggagaatga cacactgttg gtggtagctg
      181 gtgaccatgg gatgaccatg aatggggatc atggagggga cagtgagctg gaggtgtcag
      241 ctgcactttt cctgtacagc cccacagtcc tcttccctag tgtcccaccc gaggagcccg
      301 aggttattcc tcagatcagc cttgtaccca ccctggcact gctgctaggc ctgcccatcc
      361 cgtttgggaa cattggggaa gtgatggctg agctattctc aggtggcagt ggtggcggca
      421 gcagccgtgg ggatggggac gcctcccacc ctgattcccc tgctctagct caagtctcgg
      481 ctctctacat caatgcccag caggtgtccc ggtttcttca tacctactca gctgcgactc
      541 aggatctcca cgttaaagag cttcgtcggc tgcaggagct cttctccaag gcctctgcgc
      601 gttaccagca ccttctgcag catccccgag aggccgaggc agcgctgagc tcgttgactg
      661 ctgacttcca gcagttcctg cggggagctc gggctgtatg catcgagtct tgggcccgct
      721 tctctctggt ccgaatggca gggggtgctg ccctcttggc tgccgcctgc cttctttgcc
      781 tgcttgcatc ccagttggca gtagccccag gttttctctt ccgtccacta ctgctaatac
      841 ctgtagcctg gggcctaact tggaccctac tgtatgctgg agtctctgta actactggat
      901 caaagctaga cccagtggtt ctgggggctg tggctgcagc cggttcactc cttccttttc
      961 tgtggaaagc ttggcttagc tggggttcta agaggcccct ggctccccta cttccggttc
     1021 ccagacctgt cctagcccta ctactcatcc gattggccac cttcttctct gatagcttcg
     1081 ttgttgctga ggccagggcc acccccttcc ttctgggctc tctcattctc ttcctggttg
     1141 ctcagcttca ctgggagggt cagctactac cacccaaact gctcacaaca tcccgccttg
     1201 gctcttctgc cccaacagcc ccaccacggc acagtggcac ccatgccctg ctgcttggaa
     1261 ttgggctgct tttatttaca aggctagctg ggctttttca ccgctgcccc gaagagacac
     1321 ctgcttgccg ctcctctccc tggctgagtc ctctggcatc tatggtggga ggtcgagcca
     1381 agaatttgtg gtacggagct tgtgtgggtg cgctggtggc cctgttagct gctgtgagat
     1441 tgtggcttcg ccgctatggt aatctcaaga gtcctgagcc ccctgtgctc tttgtgcgct
     1501 gggggttgcc tctcatggta ctgggcacgg ctgcctactg ggcattggcc tcaggagcag
     1561 aggaagtacc accgcgcctc cgggccctgg ttgccggggc atccgctgtg ctgcctcggg
     1621 ctgtgatggg gctggctgcc tcggggctca tgctgctgct atggagacct gtgacagtgc
     1681 tggtgaaggc tggggccgct acttcaagga ccaggactat cctcactccc ttctcaggtc
     1741 cccctacttc tcaggctgac ctagattacg tggtcccaca aatctaccgc cacatgcagg
     1801 aggagttcca gggccggctc gagaggacta gagctcaggg ccccataacc gtggctgcat
     1861 accagttagg aagtgtctac tcagctgcta tggtcacagc cctcatcctc ttggccttcc
     1921 cacttctgct gttgcacgta gagcgcgtca gcctcgtgtt cctgctgctg tttctgcaga
     1981 gtttccttct cctgcatctg cttgctgctg ggacaccagt cgccactcca ggtcctttta
     2041 ctgtgatgtg gcaggcagtc tcggcttggg tccttttggc tacccagacc ttctactcta
     2101 caggccacca gcctgtcttt tcagccatcc attggcatgc ggccttcgtg ggcttcccag
     2161 atggtcacgg ctcttccact tggttgcctg ccttgctggt gggagctaac acctttgcct
     2221 cccacctcct ctttgcagcc ctgtcctccc cggaggcagt aggttgccca ctgctcctgc
     2281 tctggccttt cctgtgtgag cgtcaagggc caaagaagag gcagtcactc ccaggaagtg
     2341 agtccgaggc cagagtcaga cctgaggagg agcaagagga gccactgatg gagatgcgcc
     2401 tccgggatgc ccctcatcac ttcaatgctg ccctgttgca gctgggcctc aagtacctct
     2461 ttgtccttgg agcacagatt ctagcctgtg ccttggcagc ttccatcctc cgcaggcatc
     2521 tcatggtctg gaaggtgttt gctcccaagt ttatttttga agccataggt ttcatcgtga
     2581 gcagtgtggg acttctcctg ggcatagcgt tggtgatgcg agtggatggt gctgtgagtt
     2641 cctggttcaa aaaactagtt ctggcacagc agaggtagcc caggctgtgc atgttggcac
     2701 ctggccatgg agagagctgg ggactaatcc agcctgacct gtactggtgc tggatatatt
     2761 ctacaggcaa ctgacacagc tcttaaacca cgctgtaacc agagactgct caactctggg
     2821 actttattat tttataactg agaatcacct ggagcctgag ccctagctcc tgagttggat
     2881 gcatctgacg gaaaacaggg gcagtcacca aagtggaata aaagaacaat gtgaatgtt
//
