LOCUS       XM_039110983            3608 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class O (Pigo), transcript variant X4, mRNA.
ACCESSION   XM_039110983
VERSION     XM_039110983.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110983.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3608
                     /gene="Pigo"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class O; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
     CDS             24..3347
                     /gene="Pigo"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 3 isoform
                     X3"
                     /protein_id="XP_038966911.1"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
                     /translation="MQKISVLLFLAWVCFLFYAGIALFTSGFLLTRLELTNQSSCQEP
                     PGPGSLPWGSQGKPGACWMPSRFSRVVLVLIDALRFDFAQPQCSHVPGEPPVSVPFLG
                     KLGSLKRILEVQPHHARLYQSQVDPPTTTMQRLKALTTGSLPTFIDAGSNFASHAIVE
                     DNLIKQLTSAGKRVVFMGDDTWKDLFPGAFSQAFFFSSFNVRDLHTVDNGILEHLYPT
                     MDSGAWDVLIAHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQGLIERLENDTLLVVAG
                     DHGMTMNGDHGGDSELEVSAALFLYSPTVLFPSVPPEEPEVIPQISLVPTLALLLGLP
                     IPFGNIGEVMAELFSGGSGGGSSRGDGDASHPDSPALAQVSALYINAQQVSRFLHTYS
                     AATQDLHVKELRRLQELFSKASARYQHLLQHPREAEAALSSLTADFQQFLRGARAVCI
                     ESWARFSLVRMAGGAALLAAACLLCLLASQLAVAPGFLFRPLLLIPVAWGLTWTLLYA
                     GVSVTTGSKLDPVVLGAVAAAGSLLPFLWKAWLSWGSKRPLAPLLPVPRPVLALLLIR
                     LATFFSDSFVVAEARATPFLLGSLILFLVAQLHWEGQLLPPKLLTTSRLGSSAPTAPP
                     RHSGTHALLLGIGLLLFTRLAGLFHRCPEETPACRSSPWLSPLASMVGGRAKNLWYGA
                     CVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLPLMVLGTAAYWALASGAEEVPP
                     RLRALVAGASAVLPRAVMGLAASGLMLLLWRPVTVLVKAGAATSRTRTILTPFSGPPT
                     SQADLDYVVPQIYRHMQEEFQGRLERTRAQGPITVAAYQLGSVYSAAMVTALILLAFP
                     LLLLHVERVSLVFLLLFLQSFLLLHLLAAGTPVATPGPFTVMWQAVSAWVLLATQTFY
                     STGHQPVFSAIHWHAAFVGFPDGHGSSTWLPALLVGANTFASHLLFAALSSPEAVGCP
                     LLLLWPFLCERQGPKKRQSLPGSESEARVRPEEEQEEPLMEMRLRDAPHHFNAALLQL
                     GLKYLFVLGAQILACALAASILRRHLMVWKVFAPKFIFEAIGFIVSSVGLLLGIALVM
                     RVDGAVSSWFKKLVLAQQR"
ORIGIN      
        1 tgccggggtg cccagcatca gagatgcaga agatctctgt gctcctcttc ttagcctggg
       61 tctgttttct tttttacgct ggcattgcac tcttcaccag tggcttcctt ctcacccgtt
      121 tggaactcac caatcaaagc agctgccaag agcccccagg ccccggttcc ctgccttggg
      181 gaagccaagg aaagcctggg gcttgctgga tgccttcccg gttctccagg gttgttttgg
      241 tgctgataga tgctctgcga tttgactttg cccagcctca gtgctcacat gtgcctgggg
      301 aacctcccgt ctccgtgcct ttcctgggaa aattaggttc cttgaagagg atcctagagg
      361 ttcagcccca ccatgctcga ctgtaccaat ctcaggtgga tccccccaca accaccatgc
      421 agcgtctgaa ggctctcacc actggctcgc tgccgacttt tattgatgcc ggcagtaact
      481 tcgccagcca tgctattgtg gaagataatc tcatcaagca gctcaccagt gcaggaaagc
      541 gtgtagtctt catgggagat gatacctgga aagacctttt ccctggagca ttttcccaag
      601 ctttcttctt ctcatccttc aatgtcagag acctacacac agtggataat ggcatcttag
      661 agcacctcta tcctaccatg gacagcggcg cctgggatgt gctgattgct cacttcctgg
      721 gtgtggatca ttgtggtcat aagcatggcc ctcaccaccc tgaaatggcc aagaaactta
      781 gccagatgga ccaggtgata cagggtctga tagaacgcct ggagaatgac acactgttgg
      841 tggtagctgg tgaccatggg atgaccatga atggggatca tggaggggac agtgagctgg
      901 aggtgtcagc tgcacttttc ctgtacagcc ccacagtcct cttccctagt gtcccacccg
      961 aggagcccga ggttattcct cagatcagcc ttgtacccac cctggcactg ctgctaggcc
     1021 tgcccatccc gtttgggaac attggggaag tgatggctga gctattctca ggtggcagtg
     1081 gtggcggcag cagccgtggg gatggggacg cctcccaccc tgattcccct gctctagctc
     1141 aagtctcggc tctctacatc aatgcccagc aggtgtcccg gtttcttcat acctactcag
     1201 ctgcgactca ggatctccac gttaaagagc ttcgtcggct gcaggagctc ttctccaagg
     1261 cctctgcgcg ttaccagcac cttctgcagc atccccgaga ggccgaggca gcgctgagct
     1321 cgttgactgc tgacttccag cagttcctgc ggggagctcg ggctgtatgc atcgagtctt
     1381 gggcccgctt ctctctggtc cgaatggcag ggggtgctgc cctcttggct gccgcctgcc
     1441 ttctttgcct gcttgcatcc cagttggcag tagccccagg ttttctcttc cgtccactac
     1501 tgctaatacc tgtagcctgg ggcctaactt ggaccctact gtatgctgga gtctctgtaa
     1561 ctactggatc aaagctagac ccagtggttc tgggggctgt ggctgcagcc ggttcactcc
     1621 ttccttttct gtggaaagct tggcttagct ggggttctaa gaggcccctg gctcccctac
     1681 ttccggttcc cagacctgtc ctagccctac tactcatccg attggccacc ttcttctctg
     1741 atagcttcgt tgttgctgag gccagggcca cccccttcct tctgggctct ctcattctct
     1801 tcctggttgc tcagcttcac tgggagggtc agctactacc acccaaactg ctcacaacat
     1861 cccgccttgg ctcttctgcc ccaacagccc caccacggca cagtggcacc catgccctgc
     1921 tgcttggaat tgggctgctt ttatttacaa ggctagctgg gctttttcac cgctgccccg
     1981 aagagacacc tgcttgccgc tcctctccct ggctgagtcc tctggcatct atggtgggag
     2041 gtcgagccaa gaatttgtgg tacggagctt gtgtgggtgc gctggtggcc ctgttagctg
     2101 ctgtgagatt gtggcttcgc cgctatggta atctcaagag tcctgagccc cctgtgctct
     2161 ttgtgcgctg ggggttgcct ctcatggtac tgggcacggc tgcctactgg gcattggcct
     2221 caggagcaga ggaagtacca ccgcgcctcc gggccctggt tgccggggca tccgctgtgc
     2281 tgcctcgggc tgtgatgggg ctggctgcct cggggctcat gctgctgcta tggagacctg
     2341 tgacagtgct ggtgaaggct ggggccgcta cttcaaggac caggactatc ctcactccct
     2401 tctcaggtcc ccctacttct caggctgacc tagattacgt ggtcccacaa atctaccgcc
     2461 acatgcagga ggagttccag ggccggctcg agaggactag agctcagggc cccataaccg
     2521 tggctgcata ccagttagga agtgtctact cagctgctat ggtcacagcc ctcatcctct
     2581 tggccttccc acttctgctg ttgcacgtag agcgcgtcag cctcgtgttc ctgctgctgt
     2641 ttctgcagag tttccttctc ctgcatctgc ttgctgctgg gacaccagtc gccactccag
     2701 gtccttttac tgtgatgtgg caggcagtct cggcttgggt ccttttggct acccagacct
     2761 tctactctac aggccaccag cctgtctttt cagccatcca ttggcatgcg gccttcgtgg
     2821 gcttcccaga tggtcacggc tcttccactt ggttgcctgc cttgctggtg ggagctaaca
     2881 cctttgcctc ccacctcctc tttgcagccc tgtcctcccc ggaggcagta ggttgcccac
     2941 tgctcctgct ctggcctttc ctgtgtgagc gtcaagggcc aaagaagagg cagtcactcc
     3001 caggaagtga gtccgaggcc agagtcagac ctgaggagga gcaagaggag ccactgatgg
     3061 agatgcgcct ccgggatgcc cctcatcact tcaatgctgc cctgttgcag ctgggcctca
     3121 agtacctctt tgtccttgga gcacagattc tagcctgtgc cttggcagct tccatcctcc
     3181 gcaggcatct catggtctgg aaggtgtttg ctcccaagtt tatttttgaa gccataggtt
     3241 tcatcgtgag cagtgtggga cttctcctgg gcatagcgtt ggtgatgcga gtggatggtg
     3301 ctgtgagttc ctggttcaaa aaactagttc tggcacagca gaggtagccc aggctgtgca
     3361 tgttggcacc tggccatgga gagagctggg gactaatcca gcctgacctg tactggtgct
     3421 ggatatattc tacaggcaac tgacacagct cttaaaccac gctgtaacca gagactgctc
     3481 aactctggga ctttattatt ttataactga gaatcacctg gagcctgagc cctagctcct
     3541 gagttggatg catctgacgg aaaacagggg cagtcaccaa agtggaataa aagaacaatg
     3601 tgaatgtt
//
