LOCUS       XM_039110982            3819 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class O (Pigo), transcript variant X2, mRNA.
ACCESSION   XM_039110982
VERSION     XM_039110982.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3819
                     /gene="Pigo"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class O; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 ESTs, 26 long SRA reads"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
     CDS             172..3558
                     /gene="Pigo"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 3 isoform
                     X1"
                     /protein_id="XP_038966910.1"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
                     /translation="MHTSVVPDCKHCRRTSGRESRMQKISVLLFLAWVCFLFYAGIAL
                     FTSGFLLTRLELTNQSSCQEPPGPGSLPWGSQGKPGACWMPSRFSRVVLVLIDALRFD
                     FAQPQCSHVPGEPPVSVPFLGKLGSLKRILEVQPHHARLYQSQVDPPTTTMQRLKALT
                     TGSLPTFIDAGSNFASHAIVEDNLIKQLTSAGKRVVFMGDDTWKDLFPGAFSQAFFFS
                     SFNVRDLHTVDNGILEHLYPTMDSGAWDVLIAHFLGVDHCGHKHGPHHPEMAKKLSQM
                     DQVIQGLIERLENDTLLVVAGDHGMTMNGDHGGDSELEVSAALFLYSPTVLFPSVPPE
                     EPEVIPQISLVPTLALLLGLPIPFGNIGEVMAELFSGGSGGGSSRGDGDASHPDSPAL
                     AQVSALYINAQQVSRFLHTYSAATQDLHVKELRRLQELFSKASARYQHLLQHPREAEA
                     ALSSLTADFQQFLRGARAVCIESWARFSLVRMAGGAALLAAACLLCLLASQLAVAPGF
                     LFRPLLLIPVAWGLTWTLLYAGVSVTTGSKLDPVVLGAVAAAGSLLPFLWKAWLSWGS
                     KRPLAPLLPVPRPVLALLLIRLATFFSDSFVVAEARATPFLLGSLILFLVAQLHWEGQ
                     LLPPKLLTTSRLGSSAPTAPPRHSGTHALLLGIGLLLFTRLAGLFHRCPEETPACRSS
                     PWLSPLASMVGGRAKNLWYGACVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLP
                     LMVLGTAAYWALASGAEEVPPRLRALVAGASAVLPRAVMGLAASGLMLLLWRPVTVLV
                     KAGAATSRTRTILTPFSGPPTSQADLDYVVPQIYRHMQEEFQGRLERTRAQGPITVAA
                     YQLGSVYSAAMVTALILLAFPLLLLHVERVSLVFLLLFLQSFLLLHLLAAGTPVATPG
                     PFTVMWQAVSAWVLLATQTFYSTGHQPVFSAIHWHAAFVGFPDGHGSSTWLPALLVGA
                     NTFASHLLFAALSSPEAVGCPLLLLWPFLCERQGPKKRQSLPGSESEARVRPEEEQEE
                     PLMEMRLRDAPHHFNAALLQLGLKYLFVLGAQILACALAASILRRHLMVWKVFAPKFI
                     FEAIGFIVSSVGLLLGIALVMRVDGAVSSWFKKLVLAQQR"
     polyA_site      3819
                     /gene="Pigo"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 catgtaataa actcaccagt ggcaaattgg aaactgtcct ctttgattgg gggatgaagt
       61 taggcaaatc actcgagttt cctttggatg tccagcccaa gttccttgtc gaacttcctc
      121 gctggtgccg gtaggtggcg agagatctcc tggtagggcg ctctgtcagg catgcacacc
      181 tctgtggtgc cagactgcaa gcactgccgc cgcacttccg ggcgcgaatc caggatgcag
      241 aagatctctg tgctcctctt cttagcctgg gtctgttttc ttttttacgc tggcattgca
      301 ctcttcacca gtggcttcct tctcacccgt ttggaactca ccaatcaaag cagctgccaa
      361 gagcccccag gccccggttc cctgccttgg ggaagccaag gaaagcctgg ggcttgctgg
      421 atgccttccc ggttctccag ggttgttttg gtgctgatag atgctctgcg atttgacttt
      481 gcccagcctc agtgctcaca tgtgcctggg gaacctcccg tctccgtgcc tttcctggga
      541 aaattaggtt ccttgaagag gatcctagag gttcagcccc accatgctcg actgtaccaa
      601 tctcaggtgg atccccccac aaccaccatg cagcgtctga aggctctcac cactggctcg
      661 ctgccgactt ttattgatgc cggcagtaac ttcgccagcc atgctattgt ggaagataat
      721 ctcatcaagc agctcaccag tgcaggaaag cgtgtagtct tcatgggaga tgatacctgg
      781 aaagaccttt tccctggagc attttcccaa gctttcttct tctcatcctt caatgtcaga
      841 gacctacaca cagtggataa tggcatctta gagcacctct atcctaccat ggacagcggc
      901 gcctgggatg tgctgattgc tcacttcctg ggtgtggatc attgtggtca taagcatggc
      961 cctcaccacc ctgaaatggc caagaaactt agccagatgg accaggtgat acagggtctg
     1021 atagaacgcc tggagaatga cacactgttg gtggtagctg gtgaccatgg gatgaccatg
     1081 aatggggatc atggagggga cagtgagctg gaggtgtcag ctgcactttt cctgtacagc
     1141 cccacagtcc tcttccctag tgtcccaccc gaggagcccg aggttattcc tcagatcagc
     1201 cttgtaccca ccctggcact gctgctaggc ctgcccatcc cgtttgggaa cattggggaa
     1261 gtgatggctg agctattctc aggtggcagt ggtggcggca gcagccgtgg ggatggggac
     1321 gcctcccacc ctgattcccc tgctctagct caagtctcgg ctctctacat caatgcccag
     1381 caggtgtccc ggtttcttca tacctactca gctgcgactc aggatctcca cgttaaagag
     1441 cttcgtcggc tgcaggagct cttctccaag gcctctgcgc gttaccagca ccttctgcag
     1501 catccccgag aggccgaggc agcgctgagc tcgttgactg ctgacttcca gcagttcctg
     1561 cggggagctc gggctgtatg catcgagtct tgggcccgct tctctctggt ccgaatggca
     1621 gggggtgctg ccctcttggc tgccgcctgc cttctttgcc tgcttgcatc ccagttggca
     1681 gtagccccag gttttctctt ccgtccacta ctgctaatac ctgtagcctg gggcctaact
     1741 tggaccctac tgtatgctgg agtctctgta actactggat caaagctaga cccagtggtt
     1801 ctgggggctg tggctgcagc cggttcactc cttccttttc tgtggaaagc ttggcttagc
     1861 tggggttcta agaggcccct ggctccccta cttccggttc ccagacctgt cctagcccta
     1921 ctactcatcc gattggccac cttcttctct gatagcttcg ttgttgctga ggccagggcc
     1981 acccccttcc ttctgggctc tctcattctc ttcctggttg ctcagcttca ctgggagggt
     2041 cagctactac cacccaaact gctcacaaca tcccgccttg gctcttctgc cccaacagcc
     2101 ccaccacggc acagtggcac ccatgccctg ctgcttggaa ttgggctgct tttatttaca
     2161 aggctagctg ggctttttca ccgctgcccc gaagagacac ctgcttgccg ctcctctccc
     2221 tggctgagtc ctctggcatc tatggtggga ggtcgagcca agaatttgtg gtacggagct
     2281 tgtgtgggtg cgctggtggc cctgttagct gctgtgagat tgtggcttcg ccgctatggt
     2341 aatctcaaga gtcctgagcc ccctgtgctc tttgtgcgct gggggttgcc tctcatggta
     2401 ctgggcacgg ctgcctactg ggcattggcc tcaggagcag aggaagtacc accgcgcctc
     2461 cgggccctgg ttgccggggc atccgctgtg ctgcctcggg ctgtgatggg gctggctgcc
     2521 tcggggctca tgctgctgct atggagacct gtgacagtgc tggtgaaggc tggggccgct
     2581 acttcaagga ccaggactat cctcactccc ttctcaggtc cccctacttc tcaggctgac
     2641 ctagattacg tggtcccaca aatctaccgc cacatgcagg aggagttcca gggccggctc
     2701 gagaggacta gagctcaggg ccccataacc gtggctgcat accagttagg aagtgtctac
     2761 tcagctgcta tggtcacagc cctcatcctc ttggccttcc cacttctgct gttgcacgta
     2821 gagcgcgtca gcctcgtgtt cctgctgctg tttctgcaga gtttccttct cctgcatctg
     2881 cttgctgctg ggacaccagt cgccactcca ggtcctttta ctgtgatgtg gcaggcagtc
     2941 tcggcttggg tccttttggc tacccagacc ttctactcta caggccacca gcctgtcttt
     3001 tcagccatcc attggcatgc ggccttcgtg ggcttcccag atggtcacgg ctcttccact
     3061 tggttgcctg ccttgctggt gggagctaac acctttgcct cccacctcct ctttgcagcc
     3121 ctgtcctccc cggaggcagt aggttgccca ctgctcctgc tctggccttt cctgtgtgag
     3181 cgtcaagggc caaagaagag gcagtcactc ccaggaagtg agtccgaggc cagagtcaga
     3241 cctgaggagg agcaagagga gccactgatg gagatgcgcc tccgggatgc ccctcatcac
     3301 ttcaatgctg ccctgttgca gctgggcctc aagtacctct ttgtccttgg agcacagatt
     3361 ctagcctgtg ccttggcagc ttccatcctc cgcaggcatc tcatggtctg gaaggtgttt
     3421 gctcccaagt ttatttttga agccataggt ttcatcgtga gcagtgtggg acttctcctg
     3481 ggcatagcgt tggtgatgcg agtggatggt gctgtgagtt cctggttcaa aaaactagtt
     3541 ctggcacagc agaggtagcc caggctgtgc atgttggcac ctggccatgg agagagctgg
     3601 ggactaatcc agcctgacct gtactggtgc tggatatatt ctacaggcaa ctgacacagc
     3661 tcttaaacca cgctgtaacc agagactgct caactctggg actttattat tttataactg
     3721 agaatcacct ggagcctgag ccctagctcc tgagttggat gcatctgacg gaaaacaggg
     3781 gcagtcacca aagtggaata aaagaacaat gtgaatgtt
//
