LOCUS       XM_039110981            4687 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class O (Pigo), transcript variant X1, mRNA.
ACCESSION   XM_039110981
VERSION     XM_039110981.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110981.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4687
                     /gene="Pigo"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class O; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 ESTs, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
     CDS             597..3983
                     /gene="Pigo"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 3 isoform
                     X1"
                     /protein_id="XP_038966909.1"
                     /db_xref="GeneID:313341"
                     /db_xref="RGD:1309498"
                     /translation="MHTSVVPDCKHCRRTSGRESRMQKISVLLFLAWVCFLFYAGIAL
                     FTSGFLLTRLELTNQSSCQEPPGPGSLPWGSQGKPGACWMPSRFSRVVLVLIDALRFD
                     FAQPQCSHVPGEPPVSVPFLGKLGSLKRILEVQPHHARLYQSQVDPPTTTMQRLKALT
                     TGSLPTFIDAGSNFASHAIVEDNLIKQLTSAGKRVVFMGDDTWKDLFPGAFSQAFFFS
                     SFNVRDLHTVDNGILEHLYPTMDSGAWDVLIAHFLGVDHCGHKHGPHHPEMAKKLSQM
                     DQVIQGLIERLENDTLLVVAGDHGMTMNGDHGGDSELEVSAALFLYSPTVLFPSVPPE
                     EPEVIPQISLVPTLALLLGLPIPFGNIGEVMAELFSGGSGGGSSRGDGDASHPDSPAL
                     AQVSALYINAQQVSRFLHTYSAATQDLHVKELRRLQELFSKASARYQHLLQHPREAEA
                     ALSSLTADFQQFLRGARAVCIESWARFSLVRMAGGAALLAAACLLCLLASQLAVAPGF
                     LFRPLLLIPVAWGLTWTLLYAGVSVTTGSKLDPVVLGAVAAAGSLLPFLWKAWLSWGS
                     KRPLAPLLPVPRPVLALLLIRLATFFSDSFVVAEARATPFLLGSLILFLVAQLHWEGQ
                     LLPPKLLTTSRLGSSAPTAPPRHSGTHALLLGIGLLLFTRLAGLFHRCPEETPACRSS
                     PWLSPLASMVGGRAKNLWYGACVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLP
                     LMVLGTAAYWALASGAEEVPPRLRALVAGASAVLPRAVMGLAASGLMLLLWRPVTVLV
                     KAGAATSRTRTILTPFSGPPTSQADLDYVVPQIYRHMQEEFQGRLERTRAQGPITVAA
                     YQLGSVYSAAMVTALILLAFPLLLLHVERVSLVFLLLFLQSFLLLHLLAAGTPVATPG
                     PFTVMWQAVSAWVLLATQTFYSTGHQPVFSAIHWHAAFVGFPDGHGSSTWLPALLVGA
                     NTFASHLLFAALSSPEAVGCPLLLLWPFLCERQGPKKRQSLPGSESEARVRPEEEQEE
                     PLMEMRLRDAPHHFNAALLQLGLKYLFVLGAQILACALAASILRRHLMVWKVFAPKFI
                     FEAIGFIVSSVGLLLGIALVMRVDGAVSSWFKKLVLAQQR"
ORIGIN      
        1 agcagtcagt gttcttaacc tctgagccat ctctccagcc ctttagatgt atttttaaag
       61 acacatttta atttatcttg gtgtcttagc ttgtcttttt tgttgctgtg ataaaatgct
      121 cttgacaaaa acatctaaag gaacaaacaa tttcagtccg tcgtggtagg gaaatcacag
      181 cagcaagaac ttgaagcttg gggctggaaa gatggctcag tgagtatgta ctgcccttgc
      241 tgaagaccaa agcttagttc ctagcaccca caccttttgt cgaaaaaaca aaaatggata
      301 gtgaatctgg agactgctta gtggctaaag gcaattggag cactaagtgc atttggtaca
      361 aacgtacata tgcataaatg catattttaa aaatatggac agtggtccct gaactttttt
      421 tctttcatgt ttctgtacac accccgtcat cctccacctc tcctagacta gtacccggcc
      481 cccatttatg agttactgag tctcctatca aacttttcag cccaagttcc ttgtcgaact
      541 tcctcgctgg tgccggtagg tggcgagaga tctcctggta gggcgctctg tcaggcatgc
      601 acacctctgt ggtgccagac tgcaagcact gccgccgcac ttccgggcgc gaatccagga
      661 tgcagaagat ctctgtgctc ctcttcttag cctgggtctg ttttcttttt tacgctggca
      721 ttgcactctt caccagtggc ttccttctca cccgtttgga actcaccaat caaagcagct
      781 gccaagagcc cccaggcccc ggttccctgc cttggggaag ccaaggaaag cctggggctt
      841 gctggatgcc ttcccggttc tccagggttg ttttggtgct gatagatgct ctgcgatttg
      901 actttgccca gcctcagtgc tcacatgtgc ctggggaacc tcccgtctcc gtgcctttcc
      961 tgggaaaatt aggttccttg aagaggatcc tagaggttca gccccaccat gctcgactgt
     1021 accaatctca ggtggatccc cccacaacca ccatgcagcg tctgaaggct ctcaccactg
     1081 gctcgctgcc gacttttatt gatgccggca gtaacttcgc cagccatgct attgtggaag
     1141 ataatctcat caagcagctc accagtgcag gaaagcgtgt agtcttcatg ggagatgata
     1201 cctggaaaga ccttttccct ggagcatttt cccaagcttt cttcttctca tccttcaatg
     1261 tcagagacct acacacagtg gataatggca tcttagagca cctctatcct accatggaca
     1321 gcggcgcctg ggatgtgctg attgctcact tcctgggtgt ggatcattgt ggtcataagc
     1381 atggccctca ccaccctgaa atggccaaga aacttagcca gatggaccag gtgatacagg
     1441 gtctgataga acgcctggag aatgacacac tgttggtggt agctggtgac catgggatga
     1501 ccatgaatgg ggatcatgga ggggacagtg agctggaggt gtcagctgca cttttcctgt
     1561 acagccccac agtcctcttc cctagtgtcc cacccgagga gcccgaggtt attcctcaga
     1621 tcagccttgt acccaccctg gcactgctgc taggcctgcc catcccgttt gggaacattg
     1681 gggaagtgat ggctgagcta ttctcaggtg gcagtggtgg cggcagcagc cgtggggatg
     1741 gggacgcctc ccaccctgat tcccctgctc tagctcaagt ctcggctctc tacatcaatg
     1801 cccagcaggt gtcccggttt cttcatacct actcagctgc gactcaggat ctccacgtta
     1861 aagagcttcg tcggctgcag gagctcttct ccaaggcctc tgcgcgttac cagcaccttc
     1921 tgcagcatcc ccgagaggcc gaggcagcgc tgagctcgtt gactgctgac ttccagcagt
     1981 tcctgcgggg agctcgggct gtatgcatcg agtcttgggc ccgcttctct ctggtccgaa
     2041 tggcaggggg tgctgccctc ttggctgccg cctgccttct ttgcctgctt gcatcccagt
     2101 tggcagtagc cccaggtttt ctcttccgtc cactactgct aatacctgta gcctggggcc
     2161 taacttggac cctactgtat gctggagtct ctgtaactac tggatcaaag ctagacccag
     2221 tggttctggg ggctgtggct gcagccggtt cactccttcc ttttctgtgg aaagcttggc
     2281 ttagctgggg ttctaagagg cccctggctc ccctacttcc ggttcccaga cctgtcctag
     2341 ccctactact catccgattg gccaccttct tctctgatag cttcgttgtt gctgaggcca
     2401 gggccacccc cttccttctg ggctctctca ttctcttcct ggttgctcag cttcactggg
     2461 agggtcagct actaccaccc aaactgctca caacatcccg ccttggctct tctgccccaa
     2521 cagccccacc acggcacagt ggcacccatg ccctgctgct tggaattggg ctgcttttat
     2581 ttacaaggct agctgggctt tttcaccgct gccccgaaga gacacctgct tgccgctcct
     2641 ctccctggct gagtcctctg gcatctatgg tgggaggtcg agccaagaat ttgtggtacg
     2701 gagcttgtgt gggtgcgctg gtggccctgt tagctgctgt gagattgtgg cttcgccgct
     2761 atggtaatct caagagtcct gagccccctg tgctctttgt gcgctggggg ttgcctctca
     2821 tggtactggg cacggctgcc tactgggcat tggcctcagg agcagaggaa gtaccaccgc
     2881 gcctccgggc cctggttgcc ggggcatccg ctgtgctgcc tcgggctgtg atggggctgg
     2941 ctgcctcggg gctcatgctg ctgctatgga gacctgtgac agtgctggtg aaggctgggg
     3001 ccgctacttc aaggaccagg actatcctca ctcccttctc aggtccccct acttctcagg
     3061 ctgacctaga ttacgtggtc ccacaaatct accgccacat gcaggaggag ttccagggcc
     3121 ggctcgagag gactagagct cagggcccca taaccgtggc tgcataccag ttaggaagtg
     3181 tctactcagc tgctatggtc acagccctca tcctcttggc cttcccactt ctgctgttgc
     3241 acgtagagcg cgtcagcctc gtgttcctgc tgctgtttct gcagagtttc cttctcctgc
     3301 atctgcttgc tgctgggaca ccagtcgcca ctccaggtcc ttttactgtg atgtggcagg
     3361 cagtctcggc ttgggtcctt ttggctaccc agaccttcta ctctacaggc caccagcctg
     3421 tcttttcagc catccattgg catgcggcct tcgtgggctt cccagatggt cacggctctt
     3481 ccacttggtt gcctgccttg ctggtgggag ctaacacctt tgcctcccac ctcctctttg
     3541 cagccctgtc ctccccggag gcagtaggtt gcccactgct cctgctctgg cctttcctgt
     3601 gtgagcgtca agggccaaag aagaggcagt cactcccagg aagtgagtcc gaggccagag
     3661 tcagacctga ggaggagcaa gaggagccac tgatggagat gcgcctccgg gatgcccctc
     3721 atcacttcaa tgctgccctg ttgcagctgg gcctcaagta cctctttgtc cttggagcac
     3781 agattctagc ctgtgccttg gcagcttcca tcctccgcag gcatctcatg gtctggaagg
     3841 tgtttgctcc caagtttatt tttgaagcca taggtttcat cgtgagcagt gtgggacttc
     3901 tcctgggcat agcgttggtg atgcgagtgg atggtgctgt gagttcctgg ttcaaaaaac
     3961 tagttctggc acagcagagg tagcccaggc tgtgcatgtt ggcacctggc catggagaga
     4021 gctggggact aatccagcct gacctgtact ggtgctggat atattctaca ggcaactgac
     4081 acagctctta aaccacgctg taaccagaga ctgctcaact ctgggacttt attattttat
     4141 aactgagaat cacctggagc ctgagcccta gctcctgagt tggatgcatc tgacggaaaa
     4201 caggggcagt caccaaagtg gaataaaaga acaatgtgaa tgttcgtatg tatctaagat
     4261 ctgtggaagt gttcaccaag tcagtctctt ctctcaagat gagcagatgc ctcaccttag
     4321 gcagggcttg ttgtaccaga gaaccctttg gcaagaggtt gtctggattc actgacctct
     4381 tcccaaactg ttctattatc ccgtttgtcc cggcctctgc cttgttggtc tttggtcatt
     4441 ctgtgctttc actgatagca gggaagacaa acccagcatc atgaagcaca cagacatgtt
     4501 tgaacacaca cagaacatgt tcctaacaca cagtttgaag cactgtggtt cccctggtat
     4561 cctttccatt cacaactgca gaagcctctc tctaggtttt cagcccatgc caccttcatt
     4621 gcatcttttt gccaattgac tattcccaag ttaaagccaa aatggaatgg aacgattctc
     4681 cttgttt
//
