LOCUS       NM_001100584            4128 bp    mRNA    linear   ROD 24-APR-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class N (Pign), transcript variant 1, mRNA.
ACCESSION   NM_001100584 XM_001055659
VERSION     NM_001100584.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4128)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474000.1.
            
            On Oct 25, 2008 this sequence version replaced XM_001055659.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMD00132261, SAMD00132262
                              [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13p11"
     gene            1..4128
                     /gene="Pign"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class N"
                     /db_xref="GeneID:309051"
                     /db_xref="RGD:1311346"
     exon            1..152
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            153..226
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            227..342
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            343..591
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     CDS             371..3166
                     /gene="Pign"
                     /note="phosphatidylinositol glycan, class N"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 1"
                     /protein_id="NP_001094054.1"
                     /db_xref="GeneID:309051"
                     /db_xref="RGD:1311346"
                     /translation="MLLFFALGLLVHFVFFASIFDIYFTSPLVHGMTPQVTPLPPPAK
                     RLVLFVADGLRADALYELDEDGNSRAPFIRNVIMHEGSWGVSHTRVPTESRPGHVALI
                     AGFYEDVSAVAKGWKENPVEFDSLFNESKYTWSWGSPDILPMFAKGASGDHVYTYSYD
                     AQREDFGAHDATKLDTWVFDKVKDFFDAARNNQSLFSIVNEEKVVFFLHLLGIDTNGH
                     AHRPSSREYKDNIKKVDDGVKEIVSIFKHFYEDDGKTAFIFTSDHGMTDWGSHGAGHP
                     SETLTPFVTWGAGIKFPQNVSAQQYEDEFLKEWRLENWKRQDINQADIAPLMASLIGV
                     PFPLNSVGILPVGYLNNTGLFKAESMFTNAVQILEQFKVKMTQKKEATLPFLFTPFKL
                     LSDSQQLDILRKARSYIKQEKFDDVVSLCEELIDLALRGLSYYHTYDRLFLGISVAVG
                     FVGWTSYASLLIIKSHSDIPRGTRREGKKPHHLLPCSFIAAGVLVACFLMIQACPWTY
                     YVYCLLPVPIWYAVLKEREVIQALVESLLAFPLSRFVAYLLVFTLGIEVLVLSFFYRY
                     MLTAGLIVFAGWPFLTQLWTRAKITCLSWAFFSLLLAVFPLMPVVGRKPDLSLVMGAG
                     LLVLLLSLAVLATLVKRKLNLVKDELLVLLLQVLSTVLSMYVVYSTHHSLLKKEGLPL
                     LNQIVSWATLASSLVVPLLSPTALWQRLTSILLSLMSTYLLLSTGYEALFPLVLSCLM
                     FVWIHVEQETLQQSGVSCKQKLASIQFTYNTDITQFRQLCLDDIRRAFFLVFFLLTAF
                     FGTGNIASINSFDLASVYCFLTVFSPFMMGALMMWKILIPFVLVMCAFEAVQITTQLS
                     SKGLFLVVLVISDIMALHFFFLVKDSGSWLDIGTSISHYVIVMSMTIFLVFLNGLAQL
                     LTTKKLQLCGKPKSHLM"
     exon            592..713
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            714..812
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            813..919
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1044
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1175
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1292
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1333
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1393
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1486
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1487..1542
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1621
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1804
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1805..1944
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            1945..2044
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2137
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2138..2229
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2338
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2339..2447
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2448..2550
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2551..2653
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2654..2740
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2741..2796
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2797..2872
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2873..2946
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2947..2989
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            2990..3042
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
     exon            3043..4128
                     /gene="Pign"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcctttga ggagtagagc tgtgtctgag gggttcggct tggtttgagg gagttgaagg
       61 gaacccttcc gagatctttc agggccctgg gtcctgcctt cgttctgagg aggcctcatt
      121 cccaaactgg gcctgaggcg gataagtcgc agtgactcct gtgaaaagat cgtcttaccc
      181 cccaaaggag tcatgaccaa caagttgaga gctgctgact tagaagggca ttctcaacct
      241 tatgatattt aattcagacc tggaagaata agatatgttg gtaattctca tctttcatat
      301 tttccacatc aagatcatta tatgtaccta atactgcttc aacttctctt ccaggtagcc
      361 cgttgtggat atgctgctgt tttttgcttt gggattgctt gtgcattttg tgttcttcgc
      421 ctccatcttt gacatttatt ttacctctcc tttggttcat ggaatgactc ctcaggttac
      481 accattgcct cctccagcaa aaagattagt gttatttgtt gctgacggcc tgagagcaga
      541 tgctctttat gagttagatg aagatggaaa ctccagagca ccttttatta ggaatgttat
      601 catgcatgaa ggcagctggg gagtctctca cacgcgtgtg ccaacagagt ctcggcctgg
      661 ccacgtagcc ttgatagctg ggttttatga ggatgtcagt gcagtcgcca aagggtggaa
      721 agaaaatcct gtagaatttg attctctttt taatgaaagc aagtacacat ggagctgggg
      781 gagtccagat atcttgccta tgtttgccaa aggtgctagt ggtgaccatg tttatactta
      841 cagttacgat gctcaaagag aagattttgg tgctcacgat gccacaaagc tggatacctg
      901 ggtttttgat aaagttaagg acttctttga tgctgcaaga aacaaccaat ctttgttctc
      961 aatagtaaat gaagaaaaag tcgttttttt cttacattta ttaggaatag atacaaatgg
     1021 acatgctcat cgaccatcat caagggaata taaggacaat attaaaaaag ttgatgatgg
     1081 agtgaaggaa attgtatcaa tattcaagca tttttatgaa gatgatggga aaacagcatt
     1141 tatttttacc tctgaccatg gaatgacaga ctggggttcc catggggctg gtcatccttc
     1201 agagacttta actcctttcg ttacttgggg agctggaatc aaatttcctc aaaatgtatc
     1261 agctcagcaa tatgaggatg agtttttaaa agaatggaga ttggaaaatt ggaagaggca
     1321 agatatcaat caggctgata ttgcaccact gatggcatcc cttattggag tcccctttcc
     1381 tcttaattcg gtgggaatac ttcctgtggg ttatcttaac aacactggtc tcttcaaagc
     1441 agagagcatg tttaccaatg cagtgcagat tcttgaacag ttcaaggtga aaatgactca
     1501 gaaaaaagaa gctactttac catttttgtt tacaccattt aagttgctct ctgattctca
     1561 acagctggac attttaagaa aagcaagatc ttacataaaa caagaaaaat ttgatgacgt
     1621 agtgtccctc tgtgaggagc tgattgatct ggccctgaga ggattgtcct attatcacac
     1681 ttacgacaga ctgtttctgg gtatcagtgt tgcagttggg tttgtgggat ggacatcgta
     1741 tgcttccttg ttaatcatca agtctcattc tgatatccca cgaggcacta ggagggaagg
     1801 gaagaagcca caccatcttc tgccctgtag cttcatagct gctggtgtct tagtagcatg
     1861 cttcctgatg atccaagcct gtccctggac ttactatgtg tattgcttgc tgccggtgcc
     1921 aatatggtat gcagttctaa aagaacgtga agttattcaa gccctggttg agtcactatt
     1981 ggcttttcct ctgagccgtt ttgtcgccta cttgcttgtc tttaccctgg gcattgaagt
     2041 actggtgctc agttttttct accgctacat gttgacagct ggactgattg tgtttgcagg
     2101 ttggccattt ctcactcagc tgtggacccg agcaaagatc acctgcctga gttgggcttt
     2161 cttctctttg cttctggcag tgttcccact gatgcctgtt gtgggtagaa agccagacct
     2221 ttctctagta atgggtgccg gattgcttgt tcttctgctg tcgctggctg ttctagcaac
     2281 cctcgtaaaa agaaaactta atttggtaaa ggacgagctg ttggtacttc tgttacaggt
     2341 gctgagtaca gtgctctcta tgtacgttgt gtacagtacc caccacagtc tgttaaagaa
     2401 agaaggcctg cctcttctga atcagattgt gagctgggca acgctagcct cttctctggt
     2461 ggtgcctctc ctgagcccca cagccctctg gcagcggctg accagcatac ttctttcctt
     2521 gatgtcgacc tacttgctgc taagcacggg gtatgaagct ctctttccgt tagtgttgtc
     2581 ctgtttgatg tttgtctgga tacacgtgga acaagagacc cttcaacagt ctggtgtttc
     2641 ctgtaaacaa aagcttgcca gtatccagtt cacctacaat actgatataa ctcagttccg
     2701 acagctctgt ttggatgaca tccgtagggc ctttttcctt gttttctttt tattaactgc
     2761 attttttgga actggaaata tagcttctat taacagcttt gaccttgcct ctgtgtattg
     2821 ctttctgact gtgtttagtc ctttcatgat gggagcgctc atgatgtgga agattttaat
     2881 tccttttgtt cttgtgatgt gtgcttttga agcagttcag ataactacac agctgtcatc
     2941 aaaaggcctt tttcttgtcg ttcttgtcat atcagacatc atggctttgc attttttctt
     3001 cttggtcaag gattctggca gctggcttga tattggaaca agcatcagcc actatgtgat
     3061 tgtcatgtcc atgaccatct ttctggtgtt tcttaatggc ctggcacaat tgctcacaac
     3121 aaagaaactc caactgtgtg gcaagcccaa aagccatctc atgtgatgtt ggtgaagccg
     3181 tcagtcagca tctgcattct gtttctcctt cttaaagaaa agtcccacca aggattcaag
     3241 aaaatggata ttggaccagc aagatggctc agctggtaaa agtgcttgtt gcacaaactg
     3301 acaacctgag tttgatccct gaaacccaca ctggaaggag aaaacagact ttcaaaggct
     3361 ccaactttgg cctccgagta catgctgtga cacacatata ccatgtactt gcatacatgt
     3421 catgcacata tatatcacac acatacatgt taacactgca gttttaagag acgatggata
     3481 ataatgcaca gtacgttctc ttctagagaa tgttgcatct ggcattctgg atttacaggt
     3541 gttctgaaat aatagagctt cctgtttctt ttggttaaca cagaataatg aattccttat
     3601 gacacttcca aggggcttct tttctctttg ggtattacag gctagaaatg atactggtat
     3661 tatatgattt ttattggttt ttctcttgtt tgacagcttt tcccagtaat gtttgagggc
     3721 acctgcagtc ctttgctcct cactatcatc ttcatgtacc tgtgggggtg gtactgatgc
     3781 tctccaaagt catccccaag tatggactga gggaaccaca ggttacaaca caaaccccag
     3841 cgttggctca cttttgtggt atctgactgc tggagtatat gatgagtaag acaggtgagg
     3901 ctgcaatctg ggattcactg agcctcaagg ccaagctgtc tgccatcttt gccatttctg
     3961 ctcctgcagt atattggctt gtgcctctaa gctttcacct ttacgttttg tccatttctg
     4021 gattatcttc aaactctggg gcactctgca gctttcttgg ttattgtttc agtatcactc
     4081 cccaaatcaa aggctgtagt ttcctaacag tatcataaag attcaaat
//
