LOCUS       XM_039102116            1691 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class K (Pigk), transcript variant X3, mRNA.
ACCESSION   XM_039102116
VERSION     XM_039102116.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1691
                     /gene="Pigk"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class K; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 26 ESTs, 6 long SRA reads,
                     1 Protein, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 100 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:295543"
                     /db_xref="RGD:1306753"
     CDS             418..1353
                     /gene="Pigk"
                     /codon_start=1
                     /product="GPI-anchor transamidase isoform X2"
                     /protein_id="XP_038958044.1"
                     /db_xref="GeneID:295543"
                     /db_xref="RGD:1306753"
                     /translation="MLADDMACNARNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTV
                     ENFLRVLTGRVPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADA
                     FEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPAIGVH
                     LMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKKVLITD
                     FFGSVRKVEITTETISLQWDSQVVDSSSAEDGMAEEPTEPLKFAEQLPVAQIIHQKPK
                     LKDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF"
ORIGIN      
        1 gtcttggcca ccttggcgtt cttgtctctc ggcagctccg ccgctagtca catcgaggat
       61 caagcagaac aattctttag aagtggacat acaaataact gggctgtttt ggtatgcaca
      121 tcccgattct ggtttaatta ccgacatgtt gcaaatactc tctctgttta cagaagcgtc
      181 aagaggctag gtattccaga caggcctgac caggtggtgg tgaccaggac aggtacagtg
      241 gagtcctcca tcggcttgta tcctcaagca atgatgcagg ttgatgatgc attcttgtcc
      301 tggaggcaat aaaacagacc gtgagataca gtgccttatt ggggacctga atcgtttgaa
      361 gtctgtctgg ttagtggctt gggaagaaca gaaagaacag aaagtcacat tgtccttatg
      421 cttgctgatg acatggcgtg caatgctcgg aaccccaagc cagccacagt gttcagccac
      481 aagaacatgg agctcaatgt gtatggggac gacgtggaag tggactacag aagctatgag
      541 gtgaccgtgg agaacttttt acgggtatta actgggaggg ttccacccag cacccctcgt
      601 tcaaagcgtc ttctctccga cgacagaagc aatatcctca tttatatgac aggtcatgga
      661 ggaaacggtt ttttgaaatt ccaagattct gaagaaatca ctaacataga acttgcagat
      721 gcgtttgaac agatgtggca gaaaagacgc tacaacgagc tgctgttcat tatcgacact
      781 tgccagggcg cgtccatgta tgagcggttt tactctccta acatcatggc cttggcgagt
      841 agccaagtgg gcgaggattc cctgtcgcac cagcccgacc ccgcaattgg cgtccacctt
      901 atggacaggt acacattcta tgtcttggaa tttttggaag agattaatcc agctagccaa
      961 actaacatga atgacctttt tcaagtgtgt cccaaaagcc tctgtgtgtc tacccctgga
     1021 catcgtactg accttttcca gcgagatcct aaaaaggtcc tgataaccga tttcttcgga
     1081 agcgtgcgga aggtggaaat cacgacagag acgatcagtt tgcagtggga ttcacaagtc
     1141 gtggacagca gttctgccga ggacggaatg gcggaggagc ccacggaacc tctcaagttc
     1201 gctgagcagc tcccggtggc tcagataata caccagaagc cgaagctgaa ggactggcac
     1261 cctcccggag gcttcatcct ggggctgtgg gcgctcatca tcatggtctt ctttaagacc
     1321 tacggcatca agcacatgaa gttcattttt tagtctcaag gatgtttgga gaagaatgaa
     1381 tggaagactg cagccgtgga taaaacttag atttttatat gtttttaaag atgttacttt
     1441 tatgtaaatt tgggaagaaa attaggaaag ttgaatttta atgaactttt gactcttttt
     1501 aacttagtat tgttaacaca cttgtttatt ggccacagaa tgtgtcttcc attgtgtttg
     1561 tgtgtgtgtg agttatagaa accagaggca atgtcactgg agcatatcgc ttaattcttt
     1621 tatcctcctc tcattgtaaa agtaagagtt atgacggggg aactcccact aaaggaggtt
     1681 actttaatag t
//
