LOCUS       XM_039102115            1621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class K (Pigk), transcript variant X2, mRNA.
ACCESSION   XM_039102115
VERSION     XM_039102115.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1621
                     /gene="Pigk"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class K; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 28 ESTs, 7 long SRA reads,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 165 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:295543"
                     /db_xref="RGD:1306753"
     CDS             348..1283
                     /gene="Pigk"
                     /codon_start=1
                     /product="GPI-anchor transamidase isoform X2"
                     /protein_id="XP_038958043.1"
                     /db_xref="GeneID:295543"
                     /db_xref="RGD:1306753"
                     /translation="MLADDMACNARNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTV
                     ENFLRVLTGRVPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADA
                     FEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPAIGVH
                     LMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKKVLITD
                     FFGSVRKVEITTETISLQWDSQVVDSSSAEDGMAEEPTEPLKFAEQLPVAQIIHQKPK
                     LKDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF"
ORIGIN      
        1 tattcggggc ttgagaagcc ggcaaacatg gcgtccccct gcttctttac cctgccagtg
       61 gctgtcttgg ccaccttggc gttcttgtct ctcggcagct ccgccgctag tcacatcgag
      121 gtaggcatcg ctgtctattg agaactgatc cccgggaaga cggtgtgtcg tggctgtgag
      181 ctcctcagga tcaagcagaa caattcttta gaagtggaca tacaaataac tgggctgttt
      241 tggtatgcac atcccgattc tggtttaatt accgacatgt tgcaaatact ctctctgttt
      301 acagaagcgt caagaggcta ggtattccag acagtcacat tgtccttatg cttgctgatg
      361 acatggcgtg caatgctcgg aaccccaagc cagccacagt gttcagccac aagaacatgg
      421 agctcaatgt gtatggggac gacgtggaag tggactacag aagctatgag gtgaccgtgg
      481 agaacttttt acgggtatta actgggaggg ttccacccag cacccctcgt tcaaagcgtc
      541 ttctctccga cgacagaagc aatatcctca tttatatgac aggtcatgga ggaaacggtt
      601 ttttgaaatt ccaagattct gaagaaatca ctaacataga acttgcagat gcgtttgaac
      661 agatgtggca gaaaagacgc tacaacgagc tgctgttcat tatcgacact tgccagggcg
      721 cgtccatgta tgagcggttt tactctccta acatcatggc cttggcgagt agccaagtgg
      781 gcgaggattc cctgtcgcac cagcccgacc ccgcaattgg cgtccacctt atggacaggt
      841 acacattcta tgtcttggaa tttttggaag agattaatcc agctagccaa actaacatga
      901 atgacctttt tcaagtgtgt cccaaaagcc tctgtgtgtc tacccctgga catcgtactg
      961 accttttcca gcgagatcct aaaaaggtcc tgataaccga tttcttcgga agcgtgcgga
     1021 aggtggaaat cacgacagag acgatcagtt tgcagtggga ttcacaagtc gtggacagca
     1081 gttctgccga ggacggaatg gcggaggagc ccacggaacc tctcaagttc gctgagcagc
     1141 tcccggtggc tcagataata caccagaagc cgaagctgaa ggactggcac cctcccggag
     1201 gcttcatcct ggggctgtgg gcgctcatca tcatggtctt ctttaagacc tacggcatca
     1261 agcacatgaa gttcattttt tagtctcaag gatgtttgga gaagaatgaa tggaagactg
     1321 cagccgtgga taaaacttag atttttatat gtttttaaag atgttacttt tatgtaaatt
     1381 tgggaagaaa attaggaaag ttgaatttta atgaactttt gactcttttt aacttagtat
     1441 tgttaacaca cttgtttatt ggccacagaa tgtgtcttcc attgtgtttg tgtgtgtgtg
     1501 agttatagaa accagaggca atgtcactgg agcatatcgc ttaattcttt tatcctcctc
     1561 tcattgtaaa agtaagagtt atgacggggg aactcccact aaaggaggtt actttaatag
     1621 t
//
