LOCUS       NM_001108714            2381 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus phosphatidylinositol glycan anchor biosynthesis,
            class H (Pigh), transcript variant 1, mRNA.
ACCESSION   NM_001108714 XM_001078440 XM_343083
VERSION     NM_001108714.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Watanabe,R., Murakami,Y., Marmor,M.D., Inoue,N., Maeda,Y., Hino,J.,
            Kangawa,K., Julius,M. and Kinoshita,T.
  TITLE     Initial enzyme for glycosylphosphatidylinositol biosynthesis
            requires PIG-P and is regulated by DPM2
  JOURNAL   EMBO J 19 (16), 4402-4411 (2000)
   PUBMED   10944123
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Feb 9, 2022 this sequence version replaced NM_001108714.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.27981.1,
                                           SRR26643297.23098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JAXUCZ010000006.1  103629949-103630159 c
            212-421             JAXUCZ010000006.1  103625464-103625673 c
            422-505             JAXUCZ010000006.1  103623577-103623660 c
            506-2381            JAXUCZ010000006.1  103620708-103622583 c
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2381
                     /gene="Pigh"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class H"
                     /db_xref="GeneID:362756"
                     /db_xref="RGD:1311438"
     exon            1..211
                     /gene="Pigh"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..598
                     /gene="Pigh"
                     /EC_number="2.4.1.198"
                     /note="isoform 1 is encoded by transcript variant 1;
                     phosphatidylinositol glycan, class H; phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit H"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit H isoform 1"
                     /protein_id="NP_001102184.1"
                     /db_xref="GeneID:362756"
                     /db_xref="RGD:1311438"
                     /translation="MEDEKSFSDICGGRLALRRRYYSPYCREFGLSSARLSLWSLTAV
                     TCTVWLAAYGLFTLCENSMILSAAIFITILGLLGYLHFVKIDQETLLIIDSLGIQMTS
                     SYASGKESTTFIEMNKVKDIIINEAIYMQKVIYYLCILLKDPGKPHEISQVVPVFQSA
                     KPRLDCLIEIYRSCQEILAHQKATPTSL"
     exon            212..421
                     /gene="Pigh"
                     /inference="alignment:Splign:2.1.0"
     exon            422..505
                     /gene="Pigh"
                     /inference="alignment:Splign:2.1.0"
     exon            506..2381
                     /gene="Pigh"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagcggcac gacgggccgg cgtgtgcggc catggaggac gagaagagct tctccgatat
       61 ctgcggcggc cgcctggccc tgcggcgccg ctactattca ccgtactgcc gcgaattcgg
      121 cctcagctcg gctcggctgt cgctgtggtc gctcaccgct gtcacctgta cggtgtggct
      181 ggcggcctac gggctcttca ccctgtgcga gaatagcatg atcctctctg ccgccatctt
      241 catcactatc ttaggcctgc ttggttacct ccactttgtg aagattgatc aggagactct
      301 attaatcatc gactcacttg gcatccagat gacttcgtcc tatgcatcgg gcaaagaaag
      361 taccaccttc atagagatga acaaggtcaa ggatattatc attaatgagg ctatttacat
      421 gcagaaggtc atttactacc tctgcatttt actgaaggat ccagggaaac cacatgagat
      481 atcccaagta gtgcctgtct tccagagcgc caagccccgg ttggactgct tgattgaaat
      541 ctacagaagc tgccaggaga ttctggcaca ccagaaagcc acgccaacaa gcctatgact
      601 ctcagcactc aatcgccagt atctttatgg agaggactcc tcaaccacag tagctggttt
      661 actctctgta ctgtcaaaac catcggacag acacggtcct gggaatcaaa acgagtagat
      721 ctcagaacca cagaagaggg gctggaactt gattcatgtt catgatgtgt gtgtcataat
      781 gttcccggta taggttttat ctatattact gatcaagggg agaccttaag gattttgact
      841 tgtcaaaaga aggccagtca tagtgccaca tgcctttagt cccaacattc aagaggcaga
      901 agcaggtgat ctcttgagtt taaggccatt ctgggttaca tagtgaggat tcccccaccc
      961 ccaaaaatgt attgtccaga aagaaaattt taagtacctt catgtttgtg ttaaaatctg
     1021 tggagtatta agatgtacca gatttcacaa gaaaaatata attccatctg tatagactct
     1081 tattgaaaag ctagggaaaa ataagtcacg tttttatgta tgaattagca ggaataaaat
     1141 gccttacaaa gggctagcct ctgtccacct agctcctgtg atctgtgcag gacagtgact
     1201 ccttaatcca cagtttaggt aggaatggtg tggatgcctg taatcccagc tctcagaagg
     1261 tgtcaacagg aagattgaaa agtttgaggc cagcctgggc tacatgatga gactgtctca
     1321 aaccccaagg taataaacat gtacaacaca cagtcatggt ctggttcact gacagctttt
     1381 tattgacaga cataatacac agcatttcag ccatgggtgt caagcatatt agtacctttc
     1441 tgttacttaa tattttctat tgctcaaaag ctgcttggct aagagggctt agatgaaaaa
     1501 tgagagatta catgttggtt cccagacttg agactgtcac attaaaggat gaagaagcca
     1561 gtttacagaa gcctttgttt caaaggtggt tccttagatt ctaaagatca ggaaggagaa
     1621 aaggagctgg attaggcggc atttgccatt aatctcagca cttgggaggc agaggcagag
     1681 gcagaggcag gtagatctct gagttttagg ctagcctggt ctacataggg agttccagga
     1741 cagctaaggc tgcacagtga aaccctgtct caaagagagc aagagagaag gggggactag
     1801 gggggtgggg aggggagcag caacagatct gaccttcaag tctctgacct tcaagtctag
     1861 tacaaatagt tgcattagct ggagttctgt ttacaaagca caaacaacct aagagcagac
     1921 tgcatcctta ctggcttcaa ggcccttgga tgtaaaccta gaactgaatt ctctgccttt
     1981 cagccagcct tgaaggagct gtccaggagc ctatagtgat gtgacttgag gtagacctgt
     2041 ctccactaca accccaaatt ctggggtggg agttggggtg caaacagaaa cggttataaa
     2101 gctgcctggc tttcgagcca cgctccttta agaggcagac tcttgtgccc ttttaaagtc
     2161 aggcttgtca gttcaaagga tgaaagacta cagcagctga ggcattcgga caaactaatt
     2221 tttggccttg cagtttcttg tggtgtacaa cacacacatt gttaggttaa aggcttattt
     2281 cttgatattc ttcctattcc ctagtccatg ttactgaaaa atgataaact gtctgaaagc
     2341 tatacaataa agcttatttt tttatatgtt ggaaaaccaa a
//
