LOCUS       XM_003751315            5297 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class G (Pigg), transcript variant X1, mRNA.
ACCESSION   XM_003751315
VERSION     XM_003751315.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427662.1.
            
            On Jul 26, 2016 this sequence version replaced XM_003751315.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5297
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5297
                     /gene="Pigg"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class G; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 ESTs, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 156 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910143"
                     /db_xref="RGD:1560335"
     CDS             136..3096
                     /gene="Pigg"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 2 isoform
                     X1"
                     /protein_id="XP_003751363.1"
                     /db_xref="GeneID:100910143"
                     /db_xref="RGD:1560335"
                     /translation="MRLGSGAFAASCVAIEVIGVAIFIRGFFPAPVRSSARPEHGAET
                     PAPEPVAGVSSNWTKLPPPLFSKVVIMLIDALRDDFVFGSKGVKYMPYTTYLVEKGAS
                     HSFVAEAKPPTVTMPRIKALMTGSLPGFVDVIRNLNSPVLLEDNVIRQAKAAGKRIIF
                     YGDETWVKLFPKHFVEYDGTTSFFVSDYIEVDNNVTRHLDKVLRRGDWDVLILHYLGL
                     DHIGHISGPNSPLIGHKLSEMDSVLMKIHTSLLSKDRETLLPSLLVLCGDHGMSETGS
                     HGASSTEEVSTPLLLISSAFERKPGDVRHPKHVQQTDLAATLAIGLGLPIPKDNVGSL
                     LFPVIEGKQMREQLRFLHLNTLQLSKLLQENIPAYEKDPGFEQFKMAERLHGNWVKLH
                     LEENHSDILLGLGTKVLRQYLGALKTLSQSLSTQVAHYDIYSMAVGTLMVLEVLTLFL
                     LSTPHVLCRKAELDVPLLSPVFSLLFYLIFLVLSAIHVLVCTSSESSCYLCNLPWLAA
                     GAVMVLVSALFCAILSALIRMVTDGTLLRKNATVASSGWSEVNLLLLLGTVGHVLSLG
                     ASSFVEEEHQTWYFLINTLCLALSQETCRSYFLGDDCEPQHHFQVEQKCVNVLACTLQ
                     DSTSCSTPESESDTAGKRASLLEAHRSCKWWTVLASPWLVLICCRLLRSLNQTGVQGA
                     HRPDFSHWLTSSDHKVHLSGLAALSLVVIFILVQKGCSLVSKVALALGLLGVFCYRAA
                     IGIVLFPWQPDNKGISKGITEARFVYVFVLGILFTGTKDLLKAQVIAADFKTKIVGLW
                     EIHSGLVLLAALLLRPHNLPVLAFSLLIQTVMTKFIWKPLRHDAAEVTVMHYWFGQAF
                     FYFQGNSNNIATIDISAGCVGLETYMEVPATFLTVFGTYVGPVLWASHLVYFLSSEGN
                     NGSALSRACFCYALICSVPVATYIVLVTSLRYHLFIWSVFSPKLLYEGMHLLITAAIC
                     AVFTATNQTRHSRA"
ORIGIN      
        1 ttcccatgcg cgggcgctgg cgaggcgcgc cggaagctag atcttgacag tcggggtgtg
       61 tgggtcctgg atgcaggtgt gcggcccccg ctgctacact taatatcctg cggtcccgcc
      121 cagcggctgg gcagaatgcg gctgggctcc ggggccttcg ctgccagctg cgtagcgatt
      181 gaggtgattg gggtcgcgat atttattcgg ggattcttcc cagctcctgt gcgttcctct
      241 gccagaccgg agcatggtgc agagacccca gcgcccgaac ccgtagcagg agtcagttcg
      301 aactggacca agctgccgcc accactcttc agtaaagtgg ttattatgct gatagatgct
      361 ttaagagatg attttgtgtt tgggtcaaaa ggcgtgaagt atatgcccta cacaacgtat
      421 ctggtagaaa aaggagcgtc tcatagtttc gtggctgagg caaagccacc cacagttact
      481 atgcctcgaa tcaaggcatt gatgacggga agtctccctg gctttgttga tgtcatcagg
      541 aatctcaatt ctcctgttct cctagaagac aatgtgataa gacaggcaaa ggctgctggg
      601 aaaagaataa tcttttatgg agatgaaaca tgggttaaat tattcccaaa gcactttgtg
      661 gaatatgatg ggacaacatc attctttgtg tcagattata tagaggtgga taacaatgtc
      721 acaaggcatt tggacaaagt attaagaaga ggagactggg atgtgctgat ccttcactac
      781 ttagggctag atcacattgg ccacatttct gggcccaaca gccccctgat tggtcacaag
      841 ctcagcgaaa tggacagtgt gctcatgaaa attcatacgt cactgttgtc aaaggacaga
      901 gaaactctct tacccagtct gctggttctc tgtggtgacc atggaatgtc tgaaacaggg
      961 agtcatgggg cctcttccac agaggaagtg agcacacctc tactcctaat cagctctgcg
     1021 tttgaaagga aacctgggga tgttcgacac ccaaagcacg tccagcagac tgacttggct
     1081 gcaacactag caataggact cggtttgcca attcctaaag ataatgtagg aagcctctta
     1141 ttcccagtta tagagggaaa acagatgaga gagcagctga gatttttaca tttaaacaca
     1201 ttacagctta gcaaactatt gcaagaaaac ataccagcct atgaaaaaga tcctggattt
     1261 gagcagttta aaatggcaga aaggttgcat ggaaactggg tcaaactgca cttggaagaa
     1321 aaccattcag acattctgct tggcttgggg accaaagtac tcaggcagta cctgggtgcc
     1381 ctgaagaccc tgagtcagtc cctgagcaca caagtggctc actatgacat ctactcaatg
     1441 gcagtgggga cactcatggt tttggaggtt ctcaccctgt ttctccttag cactccacat
     1501 gtgctgtgca gaaaggctga actggatgtt cccctgttgt ctcctgtgtt ttctctgctc
     1561 ttttacttga tatttttggt tctttcggcc attcatgtcc tggtgtgcac ctcatctgag
     1621 agctcgtgct acctctgtaa cctcccgtgg ctggcagcag gggctgtgat ggtacttgtt
     1681 tctgcacttt tctgtgcaat tttgtccgct cttatcagga tggtcaccga cggcactctg
     1741 ctgaggaaga atgcaactgt tgccagctca gggtggtcag aggtgaacct ccttcttctt
     1801 ctgggcacag tgggccatgt tctgagcctg ggagccagca gcttcgtgga ggaagagcac
     1861 cagacgtggt atttccttat taatactctg tgcctggctc tgagccagga aacctgtagg
     1921 agttacttcc tgggagatga ctgtgaacct cagcatcact tccaggtgga acaaaaatgt
     1981 gtgaatgtcc ttgcctgtac cctgcaggac agtacaagct gcagtacccc tgagtctgag
     2041 tctgacacag caggtaaacg ggcctccctg ttggaagcac acagaagctg caaatggtgg
     2101 acagtgctgg caagtccgtg gctggtgctg atctgctgcc ggctactgcg ctccttgaac
     2161 cagacagggg tgcagggagc ccatcgccct gactttagtc actggcttac cagctctgac
     2221 cacaaagtcc atctctcagg cctggctgcc ctctccctgg ttgtgatctt cattttagtt
     2281 cagaagggct gctctcttgt atccaaggtg gccctagcac tggggctgct gggtgtcttc
     2341 tgctacagag cagccattgg gattgtgctg ttcccgtggc aaccagacaa caaaggcatc
     2401 tcaaagggaa ttactgaagc tcgttttgtt tatgtctttg tccttggcat tctgttcacc
     2461 ggcaccaaag atttacttaa agcacaagtc attgcagcag acttcaaaac caagattgta
     2521 ggcttgtggg agatacatag tgggctagtt cttctggcag ctctgctctt gagaccacac
     2581 aaccttccag tgttagcctt tagcctcttg attcagactg taatgactaa gttcatctgg
     2641 aagcccctga gacatgatgc agccgaggtc actgtaatgc attattggtt cggtcaagca
     2701 ttcttctatt tccagggcaa ttccaacaac attgctacca tcgacatttc agcaggctgt
     2761 gtgggcttag agacctacat ggaagtcccg gccacattcc tcacagtgtt tggaacatat
     2821 gtagggcctg tgctttgggc cagccacctt gtgtacttcc tgagctcaga aggaaacaat
     2881 ggttcagcac tgagccgcgc ttgcttctgc tatgcactga tttgctctgt tccagttgcc
     2941 acgtacattg ttctggtgac gtctctgcgc taccacttat tcatatggag tgtgttttcc
     3001 ccaaagctgc tctatgaagg gatgcatctg ctcatcacgg ctgccatttg tgcagtgttc
     3061 acggccacaa accagactcg ccactcgagg gcttaggtgg ggacagatat ttgaagctga
     3121 tcagtaactg tttgcagtat ggatttgagt atcgaactgc ttacatgcaa gattattctg
     3181 tggtggaaag aaaaaggatg ggaagcctag ggaatgagtg gataacttaa ttttacttag
     3241 atttaaatta aaaccagatt gataaaagac tccctttaag atttccccat tgataatcac
     3301 tttctcaatc ctctctgagt gagctgtgac tgctgtgctt aaatggatgg aagaaaagct
     3361 ctgggcttta tcattgcgtt tatctcggag agcccagggg ccctgtagga ggagctgcgg
     3421 ctgctacagg actacatcaa agacctcgca ctcctaagaa ctcctaagat cagagttagt
     3481 agcatttgaa atgaaaacta ggtcatttta aacattactc atttaaaaaa tgctctgtta
     3541 gtcgacaagg tggagcacac ttgcatgatg ccatactcaa gagggcagaa ccacgagcgt
     3601 ccagactgct tagactacat aggatgacca tgcctcaact cctccccacc ccaataaaaa
     3661 ctgctgcata ttaatataac aacgtaatta tatttttcaa aacaaatatt taatgaggaa
     3721 aatagtattt ttttatgttt ttacaaatgt cttaaatgac tcaattgaag atagttggaa
     3781 tctacatttg atctattgta atttatgtct gaaaaataag gaatccatct tcactcaaat
     3841 ctgtggttgg aaaagtgtga agtatcttaa taccacctct tctctgtcag cttgaatact
     3901 gtgctttgat accaaaacaa aaattggcag gtagtatata gggtttcatt gttgctggga
     3961 caagatctcc caagttttga tcctccccag tctcccaagt gttgggcttg caggtgtgcg
     4021 gccctgagcc tggtttcagg ggttagctct tccaagctag ttggaaagaa acaggagaga
     4081 tgtagtcatg tatgcaggtt aaactagtga tctggttagg gtctttttcg tagtttaaac
     4141 atatttcagt catgtaattt taaagaggcc tgtccttgag ccagtagaat tgtgtctata
     4201 ttaccatgga ctctgctgac acaaaactga tctgccaggc aagatatgcc cctaatacaa
     4261 taatgacatg aacgtcctgg tggtaactaa tcattttatg gttgaatttg aaacctcatc
     4321 tatatcatgc tgtgaacctg gtcaagctca tggtcagaga ggtcctaggc tctaagagaa
     4381 agcttactag tgtttttcac aatggatatg ttgtcacact gtcattggaa tgtctgtgtt
     4441 tgccacccac agatcagggc tgctcttaac cttggtcaga aaggctgaca gaggttaatg
     4501 caaagactgt agttcgtcag tgtgtggaga ataattgact gttgaatctt ccatcccaaa
     4561 tgaaccatct gtctctctat ttctatctct ctctgtgtct ttgttcctgt tatctccccc
     4621 cacacccacc ctcccaacaa acatacacac caaaaatcaa aacattttag aagaaacaga
     4681 aagaatgcaa gggctggaga atgaggacag gtgttgtgaa attctggtta cctacctaag
     4741 acctgcacaa aatttaggtc ctcgacattt taacataaat agggaaaggg tacttggggt
     4801 accaacccta gctgaagagc tattgttagt taatggctgc tggagaagga gtcattttcc
     4861 ttcagacata tagccactaa tacgttgcct gttacctagt caatatccac attcacatct
     4921 aagtgggcct aattaaactc tgtcactagg ggaaaagaag tgaaaggagg aggaagaagc
     4981 gttccagagg aggggtagaa gaggaggatg gggtaaaaat ggtcaaaatg tatgatatag
     5041 atgtacaaaa tgatcaaaga ttaaatacta tattttaaga gggtaagtta tgttaagtct
     5101 atgtgtatat atgctatagc ttgtgaattt aaagagggaa agaaaaatcc acaatgtatt
     5161 tggtgtcata aaaattatag ttttatcatc tattgtattt tctacaggaa ataaataata
     5221 tgagttttct gttgtttaga catttaaatt ccttagatac ttcaataaaa acaagccgta
     5281 tagccccctc acattaa
//
