LOCUS       XM_039081521            1933 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class B (Pigb), transcript variant X1, mRNA.
ACCESSION   XM_039081521
VERSION     XM_039081521.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1933
                     /gene="Pigb"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class B; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315807"
                     /db_xref="RGD:1307251"
     CDS             190..1440
                     /gene="Pigb"
                     /codon_start=1
                     /product="GPI mannosyltransferase 3 isoform X1"
                     /protein_id="XP_038937449.1"
                     /db_xref="GeneID:315807"
                     /db_xref="RGD:1307251"
                     /translation="MKIWIPRLGQALLSAVADLRLYSLTKQLENQEVARWVFFCQLCS
                     WFTWYCCTRTLTNTMETALTAVALFYYPLEGSRSKNSVKYSLLVALACVVRPTALIPW
                     VPLLFRHLYQEQRKLHLTLHHFLPVGFITFSLSLIIDRIFFGQWTLVQFNFLKFNVLQ
                     NLGTFYGSHPWHWYFSQGFPVVLGTHLPFFIHGCFLAPRRLNILLLAVLWTLLVYSML
                     GHKEFRFIYPVLPFCMVFCGYSLAHLKAWRKAALSFLLLSNVLLALYTGLVHQRGTLD
                     VMSHIQKVCPRGPDPAPASVFIMMPCHSTPYYSHVHCPLSMRFLQCPPDLTGKTQYLD
                     EADTFYLNPLGWLQQEFHSNVSLPTHLVTFNVLEKEIHAFLTSGNYERTATFFHTHWP
                     ERRTGSHIHVYERRLTSRVSTGGN"
ORIGIN      
        1 ttatggctat ttgacctggg aatggacaga gagactgaga ggttacactt atcccctaat
       61 ctttgcaagc atttacaaga ttctgcatct tctggggaaa gacagtgttc aattactggt
      121 tttttatctt catggcaatt cagtatgaac caggaagatg tgcttgacaa cccattttct
      181 ttttaaccaa tgaagatctg gattcccaga cttggccaag ctcttctgtc tgctgtagca
      241 gacctaaggc tttactccct cacgaagcag ctggaaaacc aggaagtggc acgatgggtg
      301 tttttctgcc agctgtgttc ctggttcacg tggtactgct gtacccgaac cctcacaaac
      361 accatggaga ctgccctcac tgccgttgcc cttttctact atcctctgga aggctcgagg
      421 tccaagaaca gtgtcaagta ctccctcctg gtggcacttg cttgtgtggt ccgccccaca
      481 gcacttatcc cgtgggtgcc gttactcttc agacatctct accaagaaca gagaaagctc
      541 cacctgacgc tgcatcattt tttacccgta ggattcatta ccttcagttt gtctctgata
      601 attgatcgta tcttttttgg ccaatggacg ctggtccagt ttaacttttt gaaatttaac
      661 gtgctgcaga acttggggac attttatggc tctcacccat ggcactggta cttcagtcaa
      721 gggtttccag ttgtcctggg gacccactta cccttcttca ttcacggttg cttcctggcc
      781 cctaggaggc tcaacatact gctgctggcc gtgctgtgga cactgctagt gtacagcatg
      841 ttgggccaca aagaattcag atttatctat ccagttttac cattttgcat ggtgttctgt
      901 ggctactcgc tagcccacct gaaggcatgg aggaaggcag ctctgagctt cctgctcttg
      961 tcaaatgtgc tgctggcact ctacactggc ctagttcatc agagaggcac gctggacgtc
     1021 atgagtcaca ttcagaaagt ctgccccaga ggccctgacc cagctccggc ctcagtattc
     1081 atcatgatgc cctgccactc cacgccttac tacagccatg ttcactgccc actgtccatg
     1141 cggtttctcc agtgtccccc agacttgact ggaaaaactc agtatcttga tgaagcagat
     1201 acgttctact taaacccctt aggctggtta caacaagagt ttcacagcaa tgtgtcactc
     1261 cccactcact tggtcacctt caatgttctg gagaaggaga tccatgcctt cctcacctca
     1321 gggaactatg agaggactgc tactttcttc cacactcatt ggccagagcg tcgaactggc
     1381 agtcacatac atgtctacga gcggaggtta accagcagag tcagcacagg agggaactga
     1441 actgtgagga cttctgcaga gacgttggca taactgagag aaactgcagg tgactcgtga
     1501 catgagggga agccactggg gacagatgta ccatacactg tcctgaggca ttctcaggga
     1561 acatttaatt cggcgccaga cttgagagag acctttagtt ttcctcatgg tgcagtttat
     1621 tgattcttcc atagtattca ggtgtgcaag agttcacaag acaagccagc aagctcttca
     1681 caagccaaca ggctcttgaa cccacagaag agacaaaagc atgagagtag aaaacgttag
     1741 agcggagtcc cacctcagct taagccctgc tgcacaccca cacacggcac tgactgccct
     1801 gtgtgagcca agcttgctct aagctcagct actcaaaccc agccttgttt catgcacaca
     1861 atgtctcatg cctggcttcc tgaaaactac tggtttgttt gttttttttt tcccagagca
     1921 aaaaaaaaaa aaa
//
