LOCUS       XM_039099887            1572 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X20, mRNA.
ACCESSION   XM_039099887
VERSION     XM_039099887.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1572
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 5 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             654..1412
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X4"
                     /protein_id="XP_038955815.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MANRRGGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVRE
                     RYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKVG
                     GIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVAE
                     RTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTPDSV
                     IDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 acgtgtctcg tctgtccttt ccaacgttct cggtcccttc tggacggggt tgggccgttc
       61 ttagaggagc gtggctggct gtggaggagg tgaagcctac cctacgggag gcccagaagt
      121 caggtgcgag ggtctccgta gtcaaatggg gctatgggtg ccttgagggt tggagctggt
      181 tcctaggctg agtttagtag agcgagggat tggaatctta ggacgttttt ccgactccct
      241 ttgcatatgg ccagattttg cctcatcctg gggtggaggc tcatagaccc gggctgaccc
      301 tctttggctc tagtgcaccc gagatgcctc tcagggagtc gtgccttggg actggattaa
      361 agtatgattc tcttgatttc tcagccccgt ccgagctccc tctaaggatc ctcaggagct
      421 tctactaata agggagttta ctggccatga ctgagaattt tgaggacttc ttgactttgt
      481 catttacgtt gcttgagtag ggacgtttta cagtttgctt aacatgtatc gctcggagag
      541 agaattcacc agattttaca gcctctcttc acttatagaa gccaagattc agtgacagaa
      601 gacacatttc ttaacaggct tgctctgaga actgatgcgt gaaccacctc agcatggcca
      661 atagaagagg agggactgat ttgcttagtg gtataatacc tgaactctgt cagaaatacc
      721 aagaattaaa cttcctgatt ggaggagagg gaccaaagag gatcattttg gaagaagtcc
      781 gggagagata ccagctgcac gacagggtgc aacttttggg agctttagaa cacaaggatg
      841 ttagaaatgt cctagttcaa ggacatattt ttcttaacac ctccctcaca gaagcattct
      901 gcatggcaat cgtggaagcc gccagttgtg gtttgcaggt cgtcagcaca aaggttggtg
      961 ggattcctga agtccttcca gaaaatctta ttattttatg tgagccttca gtaaaatctt
     1021 tgtgtgaagg tctggaaaaa gccattttcc aagtgaagtc ggggacattg cctgctccag
     1081 aaaatatcca caatgtagtg aagactttct acacctggcg gaatgtggca gagagaactg
     1141 aaaaagtgta tgagcgagtg tcaaaggaat ccgtgttgcc aatgcacaag agattggaca
     1201 ggctcatctc tcactgtggc ccagtgacag gctacatttt tgctttgctg gccgtgctca
     1261 gctatctctt cctcattttc ctgcaatgga tgactccaga ctctgtcatt gatgttgcaa
     1321 tagatgctac tgggccaagg agagcctgga ctcatcaatg gcctcgtgat aagaaaagag
     1381 atgagaatga taaagtatcc aaaagcaggt agaagcaagc ccaaattaac aagtcctatt
     1441 agatacttgc aatagtcctg ttagcatttg aaaataattt tgctcattgt ttttgggttt
     1501 tcgagttggt tttgtaaatt atgctacctc tgtatcgttc acttttgttt ttgaaaaaag
     1561 attcttatgc aa
//
