LOCUS       XM_039099885            1118 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X18, mRNA.
ACCESSION   XM_039099885
VERSION     XM_039099885.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099885.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1118
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             176..958
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X3"
                     /protein_id="XP_038955813.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MLPACNRQRNSPREGTDLLSGIIPELCQKYQELNFLIGGEGPKR
                     IILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGL
                     QVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTF
                     YTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFL
                     QWMTPDSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 ggaaatcgaa agggcgtccg ttacctcacc aatggcctca aagtttacta tttgcctctg
       61 agagtcatgt acaaccaatc tacagccacg actctctttc acagtctgcc attgctcagt
      121 tgctaaagcc tgtgcatggt acagtacctc acttgcccca acaactgtag ggtagatgtt
      181 acctgcatgt aacagacaaa gaaacagtcc cagagagggg actgatttgc ttagtggtat
      241 aatacctgaa ctctgtcaga aataccaaga attaaacttc ctgattggag gagagggacc
      301 aaagaggatc attttggaag aagtccggga gagataccag ctgcacgaca gggtgcaact
      361 tttgggagct ttagaacaca aggatgttag aaatgtccta gttcaaggac atatttttct
      421 taacacctcc ctcacagaag cattctgcat ggcaatcgtg gaagccgcca gttgtggttt
      481 gcaggtcgtc agcacaaagg ttggtgggat tcctgaagtc cttccagaaa atcttattat
      541 tttatgtgag ccttcagtaa aatctttgtg tgaaggtctg gaaaaagcca ttttccaagt
      601 gaagtcgggg acattgcctg ctccagaaaa tatccacaat gtagtgaaga ctttctacac
      661 ctggcggaat gtggcagaga gaactgaaaa agtgtatgag cgagtgtcaa aggaatccgt
      721 gttgccaatg cacaagagat tggacaggct catctctcac tgtggcccag tgacaggcta
      781 catttttgct ttgctggccg tgctcagcta tctcttcctc attttcctgc aatggatgac
      841 tccagactct gtcattgatg ttgcaataga tgctactggg ccaaggagag cctggactca
      901 tcaatggcct cgtgataaga aaagagatga gaatgataaa gtatccaaaa gcaggtagaa
      961 gcaagcccaa attaacaagt cctattagat acttgcaata gtcctgttag catttgaaaa
     1021 taattttgct cattgttttt gggttttcga gttggttttg taaattatgc tacctctgta
     1081 tcgttcactt ttgtttttga aaaaagattc ttatgcaa
//
