LOCUS       XM_039099883            1448 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X17, mRNA.
ACCESSION   XM_039099883
VERSION     XM_039099883.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099883.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1448
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             506..1288
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X3"
                     /protein_id="XP_038955811.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MLPACNRQRNSPREGTDLLSGIIPELCQKYQELNFLIGGEGPKR
                     IILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGL
                     QVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTF
                     YTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFL
                     QWMTPDSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 ctgtactcag agcagcactg aatcctgaaa tagtgtccgt cattcctaac gctgtagatc
       61 ctactgactt cactccagaa ccatttagga ggcatgatag tgtaataact gttgttgttg
      121 tcagcagact tgtttacaga aaaggtaata acatagtagc tttatttgca ttgacagctt
      181 tttttttaaa tttcttgtca gaaactgttc aatacttgta tgtgatgatt acttgtcttt
      241 ttattctgta tggtggcttt ataatgactg gtaattcttg caagggaagg tcagataatc
      301 agtttataca tctaagaaga gaaatggata aaagcggcta taaatgctgc cccaaccttt
      361 gaggttgtaa tggttaccga acaaaagaaa gccattgacc agatgtcctc caatcagatc
      421 tttgtaaaaa ttcagagatc tctgtgcagt tgctaaagcc tgtgcatggt acagtacctc
      481 acttgcccca acaactgtag ggtagatgtt acctgcatgt aacagacaaa gaaacagtcc
      541 cagagagggg actgatttgc ttagtggtat aatacctgaa ctctgtcaga aataccaaga
      601 attaaacttc ctgattggag gagagggacc aaagaggatc attttggaag aagtccggga
      661 gagataccag ctgcacgaca gggtgcaact tttgggagct ttagaacaca aggatgttag
      721 aaatgtccta gttcaaggac atatttttct taacacctcc ctcacagaag cattctgcat
      781 ggcaatcgtg gaagccgcca gttgtggttt gcaggtcgtc agcacaaagg ttggtgggat
      841 tcctgaagtc cttccagaaa atcttattat tttatgtgag ccttcagtaa aatctttgtg
      901 tgaaggtctg gaaaaagcca ttttccaagt gaagtcgggg acattgcctg ctccagaaaa
      961 tatccacaat gtagtgaaga ctttctacac ctggcggaat gtggcagaga gaactgaaaa
     1021 agtgtatgag cgagtgtcaa aggaatccgt gttgccaatg cacaagagat tggacaggct
     1081 catctctcac tgtggcccag tgacaggcta catttttgct ttgctggccg tgctcagcta
     1141 tctcttcctc attttcctgc aatggatgac tccagactct gtcattgatg ttgcaataga
     1201 tgctactggg ccaaggagag cctggactca tcaatggcct cgtgataaga aaagagatga
     1261 gaatgataaa gtatccaaaa gcaggtagaa gcaagcccaa attaacaagt cctattagat
     1321 acttgcaata gtcctgttag catttgaaaa taattttgct cattgttttt gggttttcga
     1381 gttggttttg taaattatgc tacctctgta tcgttcactt ttgtttttga aaaaagattc
     1441 ttatgcaa
//
