LOCUS       XM_039099881            2241 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X11, mRNA.
ACCESSION   XM_039099881
VERSION     XM_039099881.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2241
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             823..2070
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X2"
                     /protein_id="XP_038955809.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYP
                     NMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQST
                     ATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFA
                     DVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPE
                     PFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVR
                     ERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKV
                     GGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVA
                     ERTEKLSILFCLLPACSVRAASL"
ORIGIN      
        1 acgtgtctcg tctgtccttt ccaacgttct cggtcccttc tggacggggt tgggccgttc
       61 ttagaggagc gtggctggct gtggaggagg tgaagcctac cctacgggag gcccagaagt
      121 caggtgcgag ggtctccgta gtcaaatggg gctatgggtg ccttgagggt tggagctggt
      181 tcctaggctg agtttagtag agcgagggat tggaatctta ggacgttttt ccgactccct
      241 ttgcatatgg ccagattttg cctcatcctg gggtggaggc tcatagaccc gggctgaccc
      301 tctttggctc tagtgcaccc gagatgcctc tcagggagtc gtgccttggg actggattaa
      361 agtatgattc tcttgatttc tcagccccgt ccgagctccc tctaaggatc ctcaggagct
      421 tctactaata agggagttta ctggccatga ctgagaattt tgaggacttc ttgactttgt
      481 catttacgtt gcttgagtag ggacgtttta cagtttgctt aacatgtatc gctcggagag
      541 agaattcacc agattttaca gcctctcttc acttatagaa gccaagattc aagtccacac
      601 tgaaagggca cttgtagagg aaagacctac ataagtaaaa gaaggatccc aaaaagagaa
      661 gggagcagtt tgagtataac tacccttgaa taaggaagga gaaacgggat tgtctgcagc
      721 atgagctccg ggtaacactt gaagagagtg ttcttaaaaa gtgacagaag acacatttct
      781 taacaggctt gctctgagaa ctgatgcgtg aaccacctca gcatggccaa tagaagagga
      841 ggtgggcaag gccagcctcc ttcagtgtct ccttcccccg gtagctccgg aagtctttcc
      901 actgatagga cctgcactca taatatatgc atggtgtctg actttttcta cccaaacatg
      961 ggaggtgtgg aaagccacat ttaccagctc tctcagtgcc tcattgagag ggggcacaaa
     1021 gtcataactg tcacccatgc ttatggaaat cgaaagggcg tccgttacct caccaatggc
     1081 ctcaaagttt actatttgcc tctgagagtc atgtacaacc aatctacagc cacgactctc
     1141 tttcacagtc tgccattgct caggtacata tttgttcggg agagaattac gataatccat
     1201 tcccacagtt ctttctctgc catggcccat gatgctctct tccacgccaa gacaatgggg
     1261 cttcagacag tcttcacaga ccattccctt tttggatttg ctgatgtcag ctcggtgctt
     1321 acaaacaagc ttcttactgt gtctctttgt gacacaaacc acatcatttg tgtctcttac
     1381 actagtaagg agaacactgt actcagagca gcactgaatc ctgaaatagt gtccgtcatt
     1441 cctaacgctg tagatcctac tgacttcact ccagaaccat ttaggaggca tgatagtgta
     1501 ataactgttg ttgttgtcag cagacttgtt tacagaaaag ggactgattt gcttagtggt
     1561 ataatacctg aactctgtca gaaataccaa gaattaaact tcctgattgg aggagaggga
     1621 ccaaagagga tcattttgga agaagtccgg gagagatacc agctgcacga cagggtgcaa
     1681 cttttgggag ctttagaaca caaggatgtt agaaatgtcc tagttcaagg acatattttt
     1741 cttaacacct ccctcacaga agcattctgc atggcaatcg tggaagccgc cagttgtggt
     1801 ttgcaggtcg tcagcacaaa ggttggtggg attcctgaag tccttccaga aaatcttatt
     1861 attttatgtg agccttcagt aaaatctttg tgtgaaggtc tggaaaaagc cattttccaa
     1921 gtgaagtcgg ggacattgcc tgctccagaa aatatccaca atgtagtgaa gactttctac
     1981 acctggcgga atgtggcaga gagaactgaa aaactcagca tcctgttctg tcttcttcct
     2041 gcttgtagtg tacgagctgc ttcactgtag tgtcaccatc cgtaagcagt gtgtgtgctg
     2101 tttggtgtat gagcgagtgt caaaggaatc cgtgttgcca atgcacaaga gattggacag
     2161 gctcatctct cactgtggcc cagtgacagg ctacattttt gctttgctgg ccgtgctcag
     2221 ctatctcttc ctcattttcc t
//
