LOCUS       XM_039099880            2028 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X10, mRNA.
ACCESSION   XM_039099880
VERSION     XM_039099880.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099880.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2028
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             411..1868
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X1"
                     /protein_id="XP_038955808.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYP
                     NMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQST
                     ATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFA
                     DVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPE
                     PFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVR
                     ERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKV
                     GGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVA
                     ERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTPDS
                     VIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 attttagact ctgtgggtca tatgatctct ttcaaagcca ctctaccatt ttagcataga
       61 agtagccatc cacataagtg aatgggcaag ccaggttcct gtaaaaattt gttcataaaa
      121 atagacaatg tgccagtata attagatttc acatcctagc ctgttttagt atccttttct
      181 gcctcaagag ccagaacaaa aggcagtgct aaaagacaac agcctttttg ctacttttca
      241 tgactctgga atctgctaga cttagctagt agtactttta tgcgtctttt caggggttgc
      301 tgcagaaggc tgcatttagc cagtgttctg gctagaaatt gggcacaggt gacagaagac
      361 acatttctta acaggcttgc tctgagaact gatgcgtgaa ccacctcagc atggccaata
      421 gaagaggagg tgggcaaggc cagcctcctt cagtgtctcc ttcccccggt agctccggaa
      481 gtctttccac tgataggacc tgcactcata atatatgcat ggtgtctgac tttttctacc
      541 caaacatggg aggtgtggaa agccacattt accagctctc tcagtgcctc attgagaggg
      601 ggcacaaagt cataactgtc acccatgctt atggaaatcg aaagggcgtc cgttacctca
      661 ccaatggcct caaagtttac tatttgcctc tgagagtcat gtacaaccaa tctacagcca
      721 cgactctctt tcacagtctg ccattgctca ggtacatatt tgttcgggag agaattacga
      781 taatccattc ccacagttct ttctctgcca tggcccatga tgctctcttc cacgccaaga
      841 caatggggct tcagacagtc ttcacagacc attccctttt tggatttgct gatgtcagct
      901 cggtgcttac aaacaagctt cttactgtgt ctctttgtga cacaaaccac atcatttgtg
      961 tctcttacac tagtaaggag aacactgtac tcagagcagc actgaatcct gaaatagtgt
     1021 ccgtcattcc taacgctgta gatcctactg acttcactcc agaaccattt aggaggcatg
     1081 atagtgtaat aactgttgtt gttgtcagca gacttgttta cagaaaaggg actgatttgc
     1141 ttagtggtat aatacctgaa ctctgtcaga aataccaaga attaaacttc ctgattggag
     1201 gagagggacc aaagaggatc attttggaag aagtccggga gagataccag ctgcacgaca
     1261 gggtgcaact tttgggagct ttagaacaca aggatgttag aaatgtccta gttcaaggac
     1321 atatttttct taacacctcc ctcacagaag cattctgcat ggcaatcgtg gaagccgcca
     1381 gttgtggttt gcaggtcgtc agcacaaagg ttggtgggat tcctgaagtc cttccagaaa
     1441 atcttattat tttatgtgag ccttcagtaa aatctttgtg tgaaggtctg gaaaaagcca
     1501 ttttccaagt gaagtcgggg acattgcctg ctccagaaaa tatccacaat gtagtgaaga
     1561 ctttctacac ctggcggaat gtggcagaga gaactgaaaa agtgtatgag cgagtgtcaa
     1621 aggaatccgt gttgccaatg cacaagagat tggacaggct catctctcac tgtggcccag
     1681 tgacaggcta catttttgct ttgctggccg tgctcagcta tctcttcctc attttcctgc
     1741 aatggatgac tccagactct gtcattgatg ttgcaataga tgctactggg ccaaggagag
     1801 cctggactca tcaatggcct cgtgataaga aaagagatga gaatgataaa gtatccaaaa
     1861 gcaggtagaa gcaagcccaa attaacaagt cctattagat acttgcaata gtcctgttag
     1921 catttgaaaa taattttgct cattgttttt gggttttcga gttggttttg taaattatgc
     1981 tacctctgta tcgttcactt ttgtttttga aaaaagattc ttatgcaa
//
