LOCUS       XM_039099879            1985 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X6, mRNA.
ACCESSION   XM_039099879
VERSION     XM_039099879.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099879.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1985
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             368..1825
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X1"
                     /protein_id="XP_038955807.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYP
                     NMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQST
                     ATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFA
                     DVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPE
                     PFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVR
                     ERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKV
                     GGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVA
                     ERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTPDS
                     VIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 ctcacgggta agtacgtgtc tcgtctgtcc tttccaacgt tctcggtccc ttctggacgg
       61 ggttgggccg ttcttagagg agcgtggctg gctgtggagg aggtgaagcc taccctacgg
      121 gaggcccaga agtcagagtc cacactgaaa gggcacttgt agaggaaaga cctacataag
      181 taaaagaagg atcccaaaaa gagaagggag cagtttgagt ataactaccc ttgaataagg
      241 aaggagaaac gggattgtct gcagcatgag ctccgggtaa cacttgaaga gagtgttctt
      301 aaaaagtgac agaagacaca tttcttaaca ggcttgctct gagaactgat gcgtgaacca
      361 cctcagcatg gccaatagaa gaggaggtgg gcaaggccag cctccttcag tgtctccttc
      421 ccccggtagc tccggaagtc tttccactga taggacctgc actcataata tatgcatggt
      481 gtctgacttt ttctacccaa acatgggagg tgtggaaagc cacatttacc agctctctca
      541 gtgcctcatt gagagggggc acaaagtcat aactgtcacc catgcttatg gaaatcgaaa
      601 gggcgtccgt tacctcacca atggcctcaa agtttactat ttgcctctga gagtcatgta
      661 caaccaatct acagccacga ctctctttca cagtctgcca ttgctcaggt acatatttgt
      721 tcgggagaga attacgataa tccattccca cagttctttc tctgccatgg cccatgatgc
      781 tctcttccac gccaagacaa tggggcttca gacagtcttc acagaccatt ccctttttgg
      841 atttgctgat gtcagctcgg tgcttacaaa caagcttctt actgtgtctc tttgtgacac
      901 aaaccacatc atttgtgtct cttacactag taaggagaac actgtactca gagcagcact
      961 gaatcctgaa atagtgtccg tcattcctaa cgctgtagat cctactgact tcactccaga
     1021 accatttagg aggcatgata gtgtaataac tgttgttgtt gtcagcagac ttgtttacag
     1081 aaaagggact gatttgctta gtggtataat acctgaactc tgtcagaaat accaagaatt
     1141 aaacttcctg attggaggag agggaccaaa gaggatcatt ttggaagaag tccgggagag
     1201 ataccagctg cacgacaggg tgcaactttt gggagcttta gaacacaagg atgttagaaa
     1261 tgtcctagtt caaggacata tttttcttaa cacctccctc acagaagcat tctgcatggc
     1321 aatcgtggaa gccgccagtt gtggtttgca ggtcgtcagc acaaaggttg gtgggattcc
     1381 tgaagtcctt ccagaaaatc ttattatttt atgtgagcct tcagtaaaat ctttgtgtga
     1441 aggtctggaa aaagccattt tccaagtgaa gtcggggaca ttgcctgctc cagaaaatat
     1501 ccacaatgta gtgaagactt tctacacctg gcggaatgtg gcagagagaa ctgaaaaagt
     1561 gtatgagcga gtgtcaaagg aatccgtgtt gccaatgcac aagagattgg acaggctcat
     1621 ctctcactgt ggcccagtga caggctacat ttttgctttg ctggccgtgc tcagctatct
     1681 cttcctcatt ttcctgcaat ggatgactcc agactctgtc attgatgttg caatagatgc
     1741 tactgggcca aggagagcct ggactcatca atggcctcgt gataagaaaa gagatgagaa
     1801 tgataaagta tccaaaagca ggtagaagca agcccaaatt aacaagtcct attagatact
     1861 tgcaatagtc ctgttagcat ttgaaaataa ttttgctcat tgtttttggg ttttcgagtt
     1921 ggttttgtaa attatgctac ctctgtatcg ttcacttttg tttttgaaaa aagattctta
     1981 tgcaa
//
