LOCUS       XM_039099875            2181 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X2, mRNA.
ACCESSION   XM_039099875
VERSION     XM_039099875.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099875.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2181
                     /gene="Piga"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
     CDS             564..2021
                     /gene="Piga"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X1"
                     /protein_id="XP_038955803.1"
                     /db_xref="GeneID:363464"
                     /db_xref="RGD:1589723"
                     /translation="MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYP
                     NMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQST
                     ATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFA
                     DVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPE
                     PFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVR
                     ERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKV
                     GGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVA
                     ERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTPDS
                     VIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR"
ORIGIN      
        1 gtacgtgtct cgtctgtcct ttccaacgtt ctcggtccct tctggacggg gttgggccgt
       61 tcttagagga gcgtggctgg ctgtggagga ggtgaagcct accctacggg aggcccagaa
      121 gtcagccccg tccgagctcc ctctaaggat cctcaggagc ttctactaat aagggagttt
      181 actggccatg actgagaatt ttgaggactt cttgactttg tcatttacgt tgcttgagta
      241 gggacgtttt acagtttgct taacatgtat cgctcggaga gagaattcac cagattttac
      301 agcctctctt cacttataga agccaagatt caagtccaca ctgaaagggc acttgtagag
      361 gaaagaccta cataagtaaa agaaggatcc caaaaagaga agggagcagt ttgagtataa
      421 ctacccttga ataaggaagg agaaacggga ttgtctgcag catgagctcc gggtaacact
      481 tgaagagagt gttcttaaaa agtgacagaa gacacatttc ttaacaggct tgctctgaga
      541 actgatgcgt gaaccacctc agcatggcca atagaagagg aggtgggcaa ggccagcctc
      601 cttcagtgtc tccttccccc ggtagctccg gaagtctttc cactgatagg acctgcactc
      661 ataatatatg catggtgtct gactttttct acccaaacat gggaggtgtg gaaagccaca
      721 tttaccagct ctctcagtgc ctcattgaga gggggcacaa agtcataact gtcacccatg
      781 cttatggaaa tcgaaagggc gtccgttacc tcaccaatgg cctcaaagtt tactatttgc
      841 ctctgagagt catgtacaac caatctacag ccacgactct ctttcacagt ctgccattgc
      901 tcaggtacat atttgttcgg gagagaatta cgataatcca ttcccacagt tctttctctg
      961 ccatggccca tgatgctctc ttccacgcca agacaatggg gcttcagaca gtcttcacag
     1021 accattccct ttttggattt gctgatgtca gctcggtgct tacaaacaag cttcttactg
     1081 tgtctctttg tgacacaaac cacatcattt gtgtctctta cactagtaag gagaacactg
     1141 tactcagagc agcactgaat cctgaaatag tgtccgtcat tcctaacgct gtagatccta
     1201 ctgacttcac tccagaacca tttaggaggc atgatagtgt aataactgtt gttgttgtca
     1261 gcagacttgt ttacagaaaa gggactgatt tgcttagtgg tataatacct gaactctgtc
     1321 agaaatacca agaattaaac ttcctgattg gaggagaggg accaaagagg atcattttgg
     1381 aagaagtccg ggagagatac cagctgcacg acagggtgca acttttggga gctttagaac
     1441 acaaggatgt tagaaatgtc ctagttcaag gacatatttt tcttaacacc tccctcacag
     1501 aagcattctg catggcaatc gtggaagccg ccagttgtgg tttgcaggtc gtcagcacaa
     1561 aggttggtgg gattcctgaa gtccttccag aaaatcttat tattttatgt gagccttcag
     1621 taaaatcttt gtgtgaaggt ctggaaaaag ccattttcca agtgaagtcg gggacattgc
     1681 ctgctccaga aaatatccac aatgtagtga agactttcta cacctggcgg aatgtggcag
     1741 agagaactga aaaagtgtat gagcgagtgt caaaggaatc cgtgttgcca atgcacaaga
     1801 gattggacag gctcatctct cactgtggcc cagtgacagg ctacattttt gctttgctgg
     1861 ccgtgctcag ctatctcttc ctcattttcc tgcaatggat gactccagac tctgtcattg
     1921 atgttgcaat agatgctact gggccaagga gagcctggac tcatcaatgg cctcgtgata
     1981 agaaaagaga tgagaatgat aaagtatcca aaagcaggta gaagcaagcc caaattaaca
     2041 agtcctatta gatacttgca atagtcctgt tagcatttga aaataatttt gctcattgtt
     2101 tttgggtttt cgagttggtt ttgtaaatta tgctacctct gtatcgttca cttttgtttt
     2161 tgaaaaaaga ttcttatgca a
//
