LOCUS       XM_006229681            4102 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X13, mRNA.
ACCESSION   XM_006229681
VERSION     XM_006229681.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229681.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229681.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4102
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 63 ESTs, 8 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 165
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             368..2254
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X13"
                     /protein_id="XP_006229743.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGGFSPSPVTQPHPSAGLNVDFESVFGNKSTNV
                     AVDSGGFDELGGLLKPTVASQNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTT
                     KNDVSWSQPGEKKLTGGSNWQPKVAPTTAWSAATMAPPVMAYPATTPTGMIGYGIPPQ
                     MGSVPVMTQPTLIYSQPVMRPPNPFGPVPGAQLSAASSPSRHSPHRAAGKDPFAELSL
                     EDFL"
ORIGIN      
        1 aacccgagtc acgtgacaca ggggcagccc ggaaagctcc gaggaggagc ctggcgccgc
       61 cattttcctg cagctgcctg tccctcttac ccggtcgggc tccagctgac cagggaaggg
      121 gtgggctgag gttgaggcgc ggggcccggg agtgccccga cttggtgtgg gagcccgtgg
      181 ggaacacgcg agccggggct ctccgagcgg gtggcggcgc gcggccctga gccccgcccc
      241 aggccggcag gcgggcccgg agccggtggg ggtagggggt gcggtggggg gtggggaccc
      301 tcgggcgctt gggggtccca ggcccctccg gctgcggagc ggaaggggtg gcggacgagc
      361 tgcagagatg tctggccaga gcctgacgga ccgaatcacc gcggcccagc acagtgtcac
      421 tggctccgcg gtatctaaga cagtatgcaa ggccacgacc cacgagatca tgggccccaa
      481 gaaaaagcac ctggactact taattcagtg tacaaatgag atgaatgtga atatcccaca
      541 gttggcagac agtttgtttg aaagaactac taatagtagt tgggtggtgg tcttcaaatc
      601 actcattaca actcatcatt tgatggtgta tggaaatgag cgtttcattc agtatttggc
      661 ttcaagaaac acattgttta acttaagcaa ctttttggat aaaagtggat tgcaaggata
      721 tgatatgtct acatttatta gacgatatag taggtaccta aatgaaaagg cagtttcata
      781 cagacaagtt gcattcgatt tcacaaaagt gaagagagga gctgatggag ttatgagaac
      841 aatgaacaca gaaaaactgt taaaaactgt accaattatc caaaatcaaa tggatgcact
      901 tcttgatttt aatgttaata gtaatgaact tacaaatggg gtaataaatg ctgccttcat
      961 gctcctgttc aaagatgcca ttagactatt tgcagcatac aatgaaggaa ttattaattt
     1021 attggaaaaa tattttgata tgaaaaagaa ccagtgcaaa gaaggtcttg acatctataa
     1081 gaagtttttg actaggatga caagaatctc agagtttctg aaagttgcag agcaagttgg
     1141 aattgacaga ggagatattc cagatctttc acaggccccc agcagtcttc ttgatgcttt
     1201 agaacaacat ttagcttcct tggaagggaa gaaaatcaaa gattccacag ctgcaagcag
     1261 ggctacaaca ctttccaatg cagtctcttc tttggcaagc actggcctat ctctgaccaa
     1321 agtggatgaa agggaaaagc aggcagcatt agaggaagaa caggctcgat taaaagcact
     1381 aaaggaacag cgtctaaaag aacttgcaaa gaaaccgcat acctctttaa caactgcagc
     1441 ctctcctgtg tccacctcag cagggggaat aatgactgca ccagccatcg acatattttc
     1501 tacccctagt tcttctaaca gcacatccaa gctgccaaat gacctgcttg atttgcagca
     1561 gccaaccttt catccatctg tccatgctat gtcagctgct cctcaggtag caagtacatg
     1621 gggaggattc agtccttctc cggttacaca gccacatcct tcagctggcc ttaatgttga
     1681 ctttgaatct gtgtttggaa ataagtctac gaatgttgct gtagattctg gtggctttga
     1741 tgaactaggt ggacttctca aaccaacagt ggcctctcag aaccagagtc ttcctgttgc
     1801 caaacttgcg cctaacaaat tagtgtctga tgacttggat tcatctttag ccaaccttgt
     1861 gggcaatctt ggcattggaa atggaaccac taagaatgat gtaagttgga gtcaaccagg
     1921 tgaaaagaag ttaactggag gatctaactg gcaaccaaag gttgcaccaa caactgcctg
     1981 gagtgctgca acaatggcac cccctgtaat ggcctatcct gctactacac caacgggcat
     2041 gataggatat ggaattcctc ctcagatggg aagtgtacct gtaatgacac agccaacctt
     2101 aatatacagc cagcctgtca tgagaccgcc aaaccccttt ggccctgtac caggagcaca
     2161 gctgtcggca gcatccagcc cctcaaggca cagtcctcac agagctgcag gaaaggaccc
     2221 ctttgcagag ctctctctgg aggacttctt ataagtcact tagatacagt ttatgtaact
     2281 agatggaaga gaatggaatt actccaagaa tagaagtgca caggtggcga ctccttactt
     2341 ccagcaaaat ccaaactgct gtctctgaga ctcttcctcc attagagctc tccagtaacc
     2401 catgatggcc cacgacggga tgggactagt ttataggaga gcgttgtcaa taccatttat
     2461 aaagccaaga attgccatga tttaagacta agatctgtct ttttggtgac taacacttca
     2521 attctttcaa ctcctattaa tacccataat cagtaaccta ccaagaaaag cccgtatttg
     2581 gaaagtgtgg agtttgtgtt ggaaaagctg cctggagaga agagttgtgt cctttaccat
     2641 attcaacagg actcattggg ggatcaaaat cataatttta aattatgcat tatatttctt
     2701 ttctccactc ctcacaaata cagaaaccat aattaaagtt aacttttctt tttaaaaaaa
     2761 ttatattcag tttgcagtag acattcctta agtatttgta tttatttatg attatcaatt
     2821 ttacataaca ttaatattat atcaaacctc cttaagaaaa tgagtatgga tgttcacagt
     2881 atgtttgatt tttatctaca agaatgaatc tgattcagaa tgcttttcag ctgacataca
     2941 gagcactaaa tactttaagg caaaaccata ggtctgaatc tcttaagaat tctcagtctc
     3001 tatgggatgt agggacgcat tataaatgca ttaatcctta tagtcaatcc tgtgcctagg
     3061 attttgcaag ggaacagttc actgactagg aaaagcacta catttaaatt cagcattagt
     3121 gcactgggaa ggatcgtttc tgctttgtgc ttggcatgtc attatttccc acttgacatt
     3181 agggcctttc cagatgaatg tgaggaattg ctttcacttc aagactttcc ttcttttcag
     3241 taaaacttta ggagatgtaa tggggaaaag ggagggggac agaaatcctt gaacttttta
     3301 tttggcgtgt gccatgttat gatcatgtac cttttaaata aggggagata gtatctttaa
     3361 agtcagtgtc tagccaagag cttagctaat gaagaattac actgcactgt tgaccggtgc
     3421 attctgtaca tacatcttaa cgcctggggt gagaggggcc ttaagaagga caggtcattg
     3481 taggaaagca attctgtaca tgagttaagc atacttgttg cattgtctct gcagattcta
     3541 tttttgttta caatattaaa atgtatgtta gcaaatgggt ggattttcaa ataaaatgca
     3601 gcttccacaa aacatgttat ggtattctgg tttgaggtgc attctccttt ttcctttcat
     3661 tttttttttt ttttattacc agtatcatca gttctttgct aataaaatta tgcccaggaa
     3721 gttatatctg ctggtcaaat aaaatgtaaa atttgtttta tttaaacata caaaaagaat
     3781 aatgtttgaa ttcttgttac catctggact cacttagaaa cattatactt gttcactttc
     3841 ctttctgatt ggatgccttc agtcaggtaa gttaagagaa aagtactctt cggtgcataa
     3901 gattgtgttt gctaaagaat atttgtatca tgtagcatag tgaataataa ccagcatcag
     3961 tgcatcagag agagattaaa agctgtaaac tgctaagtgt ttgttatggt gtggaaaaat
     4021 catacagtct ttagccaatg tgtttttgtt aatgactgat tttcaaattt cgctattatt
     4081 aaaatgtttc catataaact ga
//
