LOCUS       XM_006229679            4127 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X11, mRNA.
ACCESSION   XM_006229679
VERSION     XM_006229679.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229679.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229679.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4127
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 64 ESTs, 8 long SRA
                     reads, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 165
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             369..2279
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X11"
                     /protein_id="XP_006229741.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGGFSPSPVTQPHPSAGLNVDFESVFGNKSTNV
                     AVDSGGFDELGGLLKPTVASQNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTT
                     KNDVSWSQPGEKKLTGGSNWQPKVAPTTAWSAATMNGMHFPQYAPPVMAYPATTPTGM
                     IGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVPGAQLSAASSPSRHSPHRAAGK
                     DPFAELSLEDFL"
ORIGIN      
        1 gaacccgagt cacgtgacac aggggcagcc cggaaagctc cgaggaggag cctggcgccg
       61 ccattttcct gcagctgcct gtccctctta cccggtcggg ctccagctga ccagggaagg
      121 ggtgggctga ggttgaggcg cggggcccgg gagtgccccg acttggtgtg ggagcccgtg
      181 gggaacacgc gagccggggc tctccgagcg ggtggcggcg cgcggccctg agccccgccc
      241 caggccggca ggcgggcccg gagccggtgg gggtaggggg tgcggtgggg ggtggggacc
      301 ctcgggcgct tgggggtccc aggcccctcc ggctgcggag cggaaggggt ggcggacgag
      361 ctgcagagat gtctggccag agcctgacgg accgaatcac cgcggcccag cacagtgtca
      421 ctggctccgc ggtatctaag acagtatgca aggccacgac ccacgagatc atgggcccca
      481 agaaaaagca cctggactac ttaattcagt gtacaaatga gatgaatgtg aatatcccac
      541 agttggcaga cagtttgttt gaaagaacta ctaatagtag ttgggtggtg gtcttcaaat
      601 cactcattac aactcatcat ttgatggtgt atggaaatga gcgtttcatt cagtatttgg
      661 cttcaagaaa cacattgttt aacttaagca actttttgga taaaagtgga ttgcaaggat
      721 atgatatgtc tacatttatt agacgatata gtaggtacct aaatgaaaag gcagtttcat
      781 acagacaagt tgcattcgat ttcacaaaag tgaagagagg agctgatgga gttatgagaa
      841 caatgaacac agaaaaactg ttaaaaactg taccaattat ccaaaatcaa atggatgcac
      901 ttcttgattt taatgttaat agtaatgaac ttacaaatgg ggtaataaat gctgccttca
      961 tgctcctgtt caaagatgcc attagactat ttgcagcata caatgaagga attattaatt
     1021 tattggaaaa atattttgat atgaaaaaga accagtgcaa agaaggtctt gacatctata
     1081 agaagttttt gactaggatg acaagaatct cagagtttct gaaagttgca gagcaagttg
     1141 gaattgacag aggagatatt ccagatcttt cacaggcccc cagcagtctt cttgatgctt
     1201 tagaacaaca tttagcttcc ttggaaggga agaaaatcaa agattccaca gctgcaagca
     1261 gggctacaac actttccaat gcagtctctt ctttggcaag cactggccta tctctgacca
     1321 aagtggatga aagggaaaag caggcagcat tagaggaaga acaggctcga ttaaaagcac
     1381 taaaggaaca gcgtctaaaa gaacttgcaa agaaaccgca tacctcttta acaactgcag
     1441 cctctcctgt gtccacctca gcagggggaa taatgactgc accagccatc gacatatttt
     1501 ctacccctag ttcttctaac agcacatcca agctgccaaa tgacctgctt gatttgcagc
     1561 agccaacctt tcatccatct gtccatgcta tgtcagctgc tcctcaggta gcaagtacat
     1621 ggggaggatt cagtccttct ccggttacac agccacatcc ttcagctggc cttaatgttg
     1681 actttgaatc tgtgtttgga aataagtcta cgaatgttgc tgtagattct ggtggctttg
     1741 atgaactagg tggacttctc aaaccaacag tggcctctca gaaccagagt cttcctgttg
     1801 ccaaacttgc gcctaacaaa ttagtgtctg atgacttgga ttcatcttta gccaaccttg
     1861 tgggcaatct tggcattgga aatggaacca ctaagaatga tgtaagttgg agtcaaccag
     1921 gtgaaaagaa gttaactgga ggatctaact ggcaaccaaa ggttgcacca acaactgcct
     1981 ggagtgctgc aacaatgaat ggcatgcatt ttccacaata cgcaccccct gtaatggcct
     2041 atcctgctac tacaccaacg ggcatgatag gatatggaat tcctcctcag atgggaagtg
     2101 tacctgtaat gacacagcca accttaatat acagccagcc tgtcatgaga ccgccaaacc
     2161 cctttggccc tgtaccagga gcacagctgt cggcagcatc cagcccctca aggcacagtc
     2221 ctcacagagc tgcaggaaag gacccctttg cagagctctc tctggaggac ttcttataag
     2281 tcacttagat acagtttatg taactagatg gaagagaatg gaattactcc aagaatagaa
     2341 gtgcacaggt ggcgactcct tacttccagc aaaatccaaa ctgctgtctc tgagactctt
     2401 cctccattag agctctccag taacccatga tggcccacga cgggatggga ctagtttata
     2461 ggagagcgtt gtcaatacca tttataaagc caagaattgc catgatttaa gactaagatc
     2521 tgtctttttg gtgactaaca cttcaattct ttcaactcct attaataccc ataatcagta
     2581 acctaccaag aaaagcccgt atttggaaag tgtggagttt gtgttggaaa agctgcctgg
     2641 agagaagagt tgtgtccttt accatattca acaggactca ttgggggatc aaaatcataa
     2701 ttttaaatta tgcattatat ttcttttctc cactcctcac aaatacagaa accataatta
     2761 aagttaactt ttctttttaa aaaaattata ttcagtttgc agtagacatt ccttaagtat
     2821 ttgtatttat ttatgattat caattttaca taacattaat attatatcaa acctccttaa
     2881 gaaaatgagt atggatgttc acagtatgtt tgatttttat ctacaagaat gaatctgatt
     2941 cagaatgctt ttcagctgac atacagagca ctaaatactt taaggcaaaa ccataggtct
     3001 gaatctctta agaattctca gtctctatgg gatgtaggga cgcattataa atgcattaat
     3061 ccttatagtc aatcctgtgc ctaggatttt gcaagggaac agttcactga ctaggaaaag
     3121 cactacattt aaattcagca ttagtgcact gggaaggatc gtttctgctt tgtgcttggc
     3181 atgtcattat ttcccacttg acattagggc ctttccagat gaatgtgagg aattgctttc
     3241 acttcaagac tttccttctt ttcagtaaaa ctttaggaga tgtaatgggg aaaagggagg
     3301 gggacagaaa tccttgaact ttttatttgg cgtgtgccat gttatgatca tgtacctttt
     3361 aaataagggg agatagtatc tttaaagtca gtgtctagcc aagagcttag ctaatgaaga
     3421 attacactgc actgttgacc ggtgcattct gtacatacat cttaacgcct ggggtgagag
     3481 gggccttaag aaggacaggt cattgtagga aagcaattct gtacatgagt taagcatact
     3541 tgttgcattg tctctgcaga ttctattttt gtttacaata ttaaaatgta tgttagcaaa
     3601 tgggtggatt ttcaaataaa atgcagcttc cacaaaacat gttatggtat tctggtttga
     3661 ggtgcattct cctttttcct ttcatttttt ttttttttta ttaccagtat catcagttct
     3721 ttgctaataa aattatgccc aggaagttat atctgctggt caaataaaat gtaaaatttg
     3781 ttttatttaa acatacaaaa agaataatgt ttgaattctt gttaccatct ggactcactt
     3841 agaaacatta tacttgttca ctttcctttc tgattggatg ccttcagtca ggtaagttaa
     3901 gagaaaagta ctcttcggtg cataagattg tgtttgctaa agaatatttg tatcatgtag
     3961 catagtgaat aataaccagc atcagtgcat cagagagaga ttaaaagctg taaactgcta
     4021 agtgtttgtt atggtgtgga aaaatcatac agtctttagc caatgtgttt ttgttaatga
     4081 ctgattttca aatttcgcta ttattaaaat gtttccatat aaactga
//
