LOCUS       XM_006229677            4149 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X9, mRNA.
ACCESSION   XM_006229677
VERSION     XM_006229677.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229677.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229677.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4149
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4149
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 72 ESTs, 12 long SRA
                     reads, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 244
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             367..2325
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X9"
                     /protein_id="XP_006229739.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGDPFSATLDAVDDAIPSLNPFLTKSSGDVHLP
                     ISSDVSTFTTRTPTHEMFVGFSPSPVTQPHPSAGLNVDFESVFGNKSTNVAVDSGGFD
                     ELGGLLKPTVASQNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTTKNDVSWSQ
                     PGEKKLTGGSNWQPKVAPTTAWSAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMT
                     QPTLIYSQPVMRPPNPFGPVPGAQIQFM"
ORIGIN      
        1 acccgagtca cgtgacacag gggcagcccg gaaagctccg aggaggagcc tggcgccgcc
       61 attttcctgc agctgcctgt ccctcttacc cggtcgggct ccagctgacc agggaagggg
      121 tgggctgagg ttgaggcgcg gggcccggga gtgccccgac ttggtgtggg agcccgtggg
      181 gaacacgcga gccggggctc tccgagcggg tggcggcgcg cggccctgag ccccgcccca
      241 ggccggcagg cgggcccgga gccggtgggg gtagggggtg cggtgggggg tggggaccct
      301 cgggcgcttg ggggtcccag gcccctccgg ctgcggagcg gaaggggtgg cggacgagct
      361 gcagagatgt ctggccagag cctgacggac cgaatcaccg cggcccagca cagtgtcact
      421 ggctccgcgg tatctaagac agtatgcaag gccacgaccc acgagatcat gggccccaag
      481 aaaaagcacc tggactactt aattcagtgt acaaatgaga tgaatgtgaa tatcccacag
      541 ttggcagaca gtttgtttga aagaactact aatagtagtt gggtggtggt cttcaaatca
      601 ctcattacaa ctcatcattt gatggtgtat ggaaatgagc gtttcattca gtatttggct
      661 tcaagaaaca cattgtttaa cttaagcaac tttttggata aaagtggatt gcaaggatat
      721 gatatgtcta catttattag acgatatagt aggtacctaa atgaaaaggc agtttcatac
      781 agacaagttg cattcgattt cacaaaagtg aagagaggag ctgatggagt tatgagaaca
      841 atgaacacag aaaaactgtt aaaaactgta ccaattatcc aaaatcaaat ggatgcactt
      901 cttgatttta atgttaatag taatgaactt acaaatgggg taataaatgc tgccttcatg
      961 ctcctgttca aagatgccat tagactattt gcagcataca atgaaggaat tattaattta
     1021 ttggaaaaat attttgatat gaaaaagaac cagtgcaaag aaggtcttga catctataag
     1081 aagtttttga ctaggatgac aagaatctca gagtttctga aagttgcaga gcaagttgga
     1141 attgacagag gagatattcc agatctttca caggccccca gcagtcttct tgatgcttta
     1201 gaacaacatt tagcttcctt ggaagggaag aaaatcaaag attccacagc tgcaagcagg
     1261 gctacaacac tttccaatgc agtctcttct ttggcaagca ctggcctatc tctgaccaaa
     1321 gtggatgaaa gggaaaagca ggcagcatta gaggaagaac aggctcgatt aaaagcacta
     1381 aaggaacagc gtctaaaaga acttgcaaag aaaccgcata cctctttaac aactgcagcc
     1441 tctcctgtgt ccacctcagc agggggaata atgactgcac cagccatcga catattttct
     1501 acccctagtt cttctaacag cacatccaag ctgccaaatg acctgcttga tttgcagcag
     1561 ccaacctttc atccatctgt ccatgctatg tcagctgctc ctcaggtagc aagtacatgg
     1621 ggagatcctt tctctgctac tctagatgct gttgatgatg ccattccaag cttaaatcct
     1681 ttcctcacaa aaagtagtgg tgatgttcac cttcctattt cttcagatgt atccactttt
     1741 actactagga cacctactca tgaaatgttt gttggattca gtccttctcc ggttacacag
     1801 ccacatcctt cagctggcct taatgttgac tttgaatctg tgtttggaaa taagtctacg
     1861 aatgttgctg tagattctgg tggctttgat gaactaggtg gacttctcaa accaacagtg
     1921 gcctctcaga accagagtct tcctgttgcc aaacttgcgc ctaacaaatt agtgtctgat
     1981 gacttggatt catctttagc caaccttgtg ggcaatcttg gcattggaaa tggaaccact
     2041 aagaatgatg taagttggag tcaaccaggt gaaaagaagt taactggagg atctaactgg
     2101 caaccaaagg ttgcaccaac aactgcctgg agtgctgcaa caatggcacc ccctgtaatg
     2161 gcctatcctg ctactacacc aacgggcatg ataggatatg gaattcctcc tcagatggga
     2221 agtgtacctg taatgacaca gccaacctta atatacagcc agcctgtcat gagaccgcca
     2281 aacccctttg gccctgtacc aggagcacag atacagttta tgtaactaga tggaagagaa
     2341 tggaattact ccaagaatag aagtgcacag gtggcgactc cttacttcca gcaaaatcca
     2401 aactgctgtc tctgagactc ttcctccatt agagctctcc agtaacccat gatggcccac
     2461 gacgggatgg gactagttta taggagagcg ttgtcaatac catttataaa gccaagaatt
     2521 gccatgattt aagactaaga tctgtctttt tggtgactaa cacttcaatt ctttcaactc
     2581 ctattaatac ccataatcag taacctacca agaaaagccc gtatttggaa agtgtggagt
     2641 ttgtgttgga aaagctgcct ggagagaaga gttgtgtcct ttaccatatt caacaggact
     2701 cattggggga tcaaaatcat aattttaaat tatgcattat atttcttttc tccactcctc
     2761 acaaatacag aaaccataat taaagttaac ttttcttttt aaaaaaatta tattcagttt
     2821 gcagtagaca ttccttaagt atttgtattt atttatgatt atcaatttta cataacatta
     2881 atattatatc aaacctcctt aagaaaatga gtatggatgt tcacagtatg tttgattttt
     2941 atctacaaga atgaatctga ttcagaatgc ttttcagctg acatacagag cactaaatac
     3001 tttaaggcaa aaccataggt ctgaatctct taagaattct cagtctctat gggatgtagg
     3061 gacgcattat aaatgcatta atccttatag tcaatcctgt gcctaggatt ttgcaaggga
     3121 acagttcact gactaggaaa agcactacat ttaaattcag cattagtgca ctgggaagga
     3181 tcgtttctgc tttgtgcttg gcatgtcatt atttcccact tgacattagg gcctttccag
     3241 atgaatgtga ggaattgctt tcacttcaag actttccttc ttttcagtaa aactttagga
     3301 gatgtaatgg ggaaaaggga gggggacaga aatccttgaa ctttttattt ggcgtgtgcc
     3361 atgttatgat catgtacctt ttaaataagg ggagatagta tctttaaagt cagtgtctag
     3421 ccaagagctt agctaatgaa gaattacact gcactgttga ccggtgcatt ctgtacatac
     3481 atcttaacgc ctggggtgag aggggcctta agaaggacag gtcattgtag gaaagcaatt
     3541 ctgtacatga gttaagcata cttgttgcat tgtctctgca gattctattt ttgtttacaa
     3601 tattaaaatg tatgttagca aatgggtgga ttttcaaata aaatgcagct tccacaaaac
     3661 atgttatggt attctggttt gaggtgcatt ctcctttttc ctttcatttt tttttttttt
     3721 tattaccagt atcatcagtt ctttgctaat aaaattatgc ccaggaagtt atatctgctg
     3781 gtcaaataaa atgtaaaatt tgttttattt aaacatacaa aaagaataat gtttgaattc
     3841 ttgttaccat ctggactcac ttagaaacat tatacttgtt cactttcctt tctgattgga
     3901 tgccttcagt caggtaagtt aagagaaaag tactcttcgg tgcataagat tgtgtttgct
     3961 aaagaatatt tgtatcatgt agcatagtga ataataacca gcatcagtgc atcagagaga
     4021 gattaaaagc tgtaaactgc taagtgtttg ttatggtgtg gaaaaatcat acagtcttta
     4081 gccaatgtgt ttttgttaat gactgatttt caaatttcgc tattattaaa atgtttccat
     4141 ataaactga
//
