LOCUS       XM_006229675            4218 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X7, mRNA.
ACCESSION   XM_006229675
VERSION     XM_006229675.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229675.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229675.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4218
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4218
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 63 ESTs, 8 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 135
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             370..2370
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X7"
                     /protein_id="XP_006229737.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGDAVDDAIPSLNPFLTKSSGDVHLPISSDVST
                     FTTRTPTHEMFVGFSPSPVTQPHPSAGLNVDFESVFGNKSTNVAVDSGGGLLKPTVAS
                     QNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTTKNDVSWSQPGEKKLTGGSNW
                     QPKVAPTTAWSAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMR
                     PPNPFGPVPGAQLSAASSPSRHSPHRAAGKDPFAELSLEDFL"
ORIGIN      
        1 ggaacccgag tcacgtgaca caggggcagc ccggaaagct ccgaggagga gcctggcgcc
       61 gccattttcc tgcagctgcc tgtccctctt acccggtcgg gctccagctg accagggaag
      121 gggtgggctg aggttgaggc gcggggcccg ggagtgcccc gacttggtgt gggagcccgt
      181 ggggaacacg cgagccgggg ctctccgagc gggtggcggc gcgcggccct gagccccgcc
      241 ccaggccggc aggcgggccc ggagccggtg ggggtagggg gtgcggtggg gggtggggac
      301 cctcgggcgc ttgggggtcc caggcccctc cggctgcgga gcggaagggg tggcggacga
      361 gctgcagaga tgtctggcca gagcctgacg gaccgaatca ccgcggccca gcacagtgtc
      421 actggctccg cggtatctaa gacagtatgc aaggccacga cccacgagat catgggcccc
      481 aagaaaaagc acctggacta cttaattcag tgtacaaatg agatgaatgt gaatatccca
      541 cagttggcag acagtttgtt tgaaagaact actaatagta gttgggtggt ggtcttcaaa
      601 tcactcatta caactcatca tttgatggtg tatggaaatg agcgtttcat tcagtatttg
      661 gcttcaagaa acacattgtt taacttaagc aactttttgg ataaaagtgg attgcaagga
      721 tatgatatgt ctacatttat tagacgatat agtaggtacc taaatgaaaa ggcagtttca
      781 tacagacaag ttgcattcga tttcacaaaa gtgaagagag gagctgatgg agttatgaga
      841 acaatgaaca cagaaaaact gttaaaaact gtaccaatta tccaaaatca aatggatgca
      901 cttcttgatt ttaatgttaa tagtaatgaa cttacaaatg gggtaataaa tgctgccttc
      961 atgctcctgt tcaaagatgc cattagacta tttgcagcat acaatgaagg aattattaat
     1021 ttattggaaa aatattttga tatgaaaaag aaccagtgca aagaaggtct tgacatctat
     1081 aagaagtttt tgactaggat gacaagaatc tcagagtttc tgaaagttgc agagcaagtt
     1141 ggaattgaca gaggagatat tccagatctt tcacaggccc ccagcagtct tcttgatgct
     1201 ttagaacaac atttagcttc cttggaaggg aagaaaatca aagattccac agctgcaagc
     1261 agggctacaa cactttccaa tgcagtctct tctttggcaa gcactggcct atctctgacc
     1321 aaagtggatg aaagggaaaa gcaggcagca ttagaggaag aacaggctcg attaaaagca
     1381 ctaaaggaac agcgtctaaa agaacttgca aagaaaccgc atacctcttt aacaactgca
     1441 gcctctcctg tgtccacctc agcaggggga ataatgactg caccagccat cgacatattt
     1501 tctaccccta gttcttctaa cagcacatcc aagctgccaa atgacctgct tgatttgcag
     1561 cagccaacct ttcatccatc tgtccatgct atgtcagctg ctcctcaggt agcaagtaca
     1621 tggggagatg ctgttgatga tgccattcca agcttaaatc ctttcctcac aaaaagtagt
     1681 ggtgatgttc accttcctat ttcttcagat gtatccactt ttactactag gacacctact
     1741 catgaaatgt ttgttggatt cagtccttct ccggttacac agccacatcc ttcagctggc
     1801 cttaatgttg actttgaatc tgtgtttgga aataagtcta cgaatgttgc tgtagattct
     1861 ggtggtggac ttctcaaacc aacagtggcc tctcagaacc agagtcttcc tgttgccaaa
     1921 cttgcgccta acaaattagt gtctgatgac ttggattcat ctttagccaa ccttgtgggc
     1981 aatcttggca ttggaaatgg aaccactaag aatgatgtaa gttggagtca accaggtgaa
     2041 aagaagttaa ctggaggatc taactggcaa ccaaaggttg caccaacaac tgcctggagt
     2101 gctgcaacaa tggcaccccc tgtaatggcc tatcctgcta ctacaccaac gggcatgata
     2161 ggatatggaa ttcctcctca gatgggaagt gtacctgtaa tgacacagcc aaccttaata
     2221 tacagccagc ctgtcatgag accgccaaac ccctttggcc ctgtaccagg agcacagctg
     2281 tcggcagcat ccagcccctc aaggcacagt cctcacagag ctgcaggaaa ggaccccttt
     2341 gcagagctct ctctggagga cttcttataa gtcacttaga tacagtttat gtaactagat
     2401 ggaagagaat ggaattactc caagaataga agtgcacagg tggcgactcc ttacttccag
     2461 caaaatccaa actgctgtct ctgagactct tcctccatta gagctctcca gtaacccatg
     2521 atggcccacg acgggatggg actagtttat aggagagcgt tgtcaatacc atttataaag
     2581 ccaagaattg ccatgattta agactaagat ctgtcttttt ggtgactaac acttcaattc
     2641 tttcaactcc tattaatacc cataatcagt aacctaccaa gaaaagcccg tatttggaaa
     2701 gtgtggagtt tgtgttggaa aagctgcctg gagagaagag ttgtgtcctt taccatattc
     2761 aacaggactc attgggggat caaaatcata attttaaatt atgcattata tttcttttct
     2821 ccactcctca caaatacaga aaccataatt aaagttaact tttcttttta aaaaaattat
     2881 attcagtttg cagtagacat tccttaagta tttgtattta tttatgatta tcaattttac
     2941 ataacattaa tattatatca aacctcctta agaaaatgag tatggatgtt cacagtatgt
     3001 ttgattttta tctacaagaa tgaatctgat tcagaatgct tttcagctga catacagagc
     3061 actaaatact ttaaggcaaa accataggtc tgaatctctt aagaattctc agtctctatg
     3121 ggatgtaggg acgcattata aatgcattaa tccttatagt caatcctgtg cctaggattt
     3181 tgcaagggaa cagttcactg actaggaaaa gcactacatt taaattcagc attagtgcac
     3241 tgggaaggat cgtttctgct ttgtgcttgg catgtcatta tttcccactt gacattaggg
     3301 cctttccaga tgaatgtgag gaattgcttt cacttcaaga ctttccttct tttcagtaaa
     3361 actttaggag atgtaatggg gaaaagggag ggggacagaa atccttgaac tttttatttg
     3421 gcgtgtgcca tgttatgatc atgtaccttt taaataaggg gagatagtat ctttaaagtc
     3481 agtgtctagc caagagctta gctaatgaag aattacactg cactgttgac cggtgcattc
     3541 tgtacataca tcttaacgcc tggggtgaga ggggccttaa gaaggacagg tcattgtagg
     3601 aaagcaattc tgtacatgag ttaagcatac ttgttgcatt gtctctgcag attctatttt
     3661 tgtttacaat attaaaatgt atgttagcaa atgggtggat tttcaaataa aatgcagctt
     3721 ccacaaaaca tgttatggta ttctggtttg aggtgcattc tcctttttcc tttcattttt
     3781 tttttttttt attaccagta tcatcagttc tttgctaata aaattatgcc caggaagtta
     3841 tatctgctgg tcaaataaaa tgtaaaattt gttttattta aacatacaaa aagaataatg
     3901 tttgaattct tgttaccatc tggactcact tagaaacatt atacttgttc actttccttt
     3961 ctgattggat gccttcagtc aggtaagtta agagaaaagt actcttcggt gcataagatt
     4021 gtgtttgcta aagaatattt gtatcatgta gcatagtgaa taataaccag catcagtgca
     4081 tcagagagag attaaaagct gtaaactgct aagtgtttgt tatggtgtgg aaaaatcata
     4141 cagtctttag ccaatgtgtt tttgttaatg actgattttc aaatttcgct attattaaaa
     4201 tgtttccata taaactga
//
