LOCUS       XM_006229674            4233 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X6, mRNA.
ACCESSION   XM_006229674
VERSION     XM_006229674.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229674.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229674.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4233
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 63 ESTs, 8 long SRA
                     reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 135
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             370..2385
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X6"
                     /protein_id="XP_006229736.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGDAVDDAIPSLNPFLTKSSGDVHLPISSDVST
                     FTTRTPTHEMFVGFSPSPVTQPHPSAGLNVDFESVFGNKSTNVAVDSGGFDELGGLLK
                     PTVASQNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTTKNDVSWSQPGEKKLT
                     GGSNWQPKVAPTTAWSAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYS
                     QPVMRPPNPFGPVPGAQLSAASSPSRHSPHRAAGKDPFAELSLEDFL"
ORIGIN      
        1 ggaacccgag tcacgtgaca caggggcagc ccggaaagct ccgaggagga gcctggcgcc
       61 gccattttcc tgcagctgcc tgtccctctt acccggtcgg gctccagctg accagggaag
      121 gggtgggctg aggttgaggc gcggggcccg ggagtgcccc gacttggtgt gggagcccgt
      181 ggggaacacg cgagccgggg ctctccgagc gggtggcggc gcgcggccct gagccccgcc
      241 ccaggccggc aggcgggccc ggagccggtg ggggtagggg gtgcggtggg gggtggggac
      301 cctcgggcgc ttgggggtcc caggcccctc cggctgcgga gcggaagggg tggcggacga
      361 gctgcagaga tgtctggcca gagcctgacg gaccgaatca ccgcggccca gcacagtgtc
      421 actggctccg cggtatctaa gacagtatgc aaggccacga cccacgagat catgggcccc
      481 aagaaaaagc acctggacta cttaattcag tgtacaaatg agatgaatgt gaatatccca
      541 cagttggcag acagtttgtt tgaaagaact actaatagta gttgggtggt ggtcttcaaa
      601 tcactcatta caactcatca tttgatggtg tatggaaatg agcgtttcat tcagtatttg
      661 gcttcaagaa acacattgtt taacttaagc aactttttgg ataaaagtgg attgcaagga
      721 tatgatatgt ctacatttat tagacgatat agtaggtacc taaatgaaaa ggcagtttca
      781 tacagacaag ttgcattcga tttcacaaaa gtgaagagag gagctgatgg agttatgaga
      841 acaatgaaca cagaaaaact gttaaaaact gtaccaatta tccaaaatca aatggatgca
      901 cttcttgatt ttaatgttaa tagtaatgaa cttacaaatg gggtaataaa tgctgccttc
      961 atgctcctgt tcaaagatgc cattagacta tttgcagcat acaatgaagg aattattaat
     1021 ttattggaaa aatattttga tatgaaaaag aaccagtgca aagaaggtct tgacatctat
     1081 aagaagtttt tgactaggat gacaagaatc tcagagtttc tgaaagttgc agagcaagtt
     1141 ggaattgaca gaggagatat tccagatctt tcacaggccc ccagcagtct tcttgatgct
     1201 ttagaacaac atttagcttc cttggaaggg aagaaaatca aagattccac agctgcaagc
     1261 agggctacaa cactttccaa tgcagtctct tctttggcaa gcactggcct atctctgacc
     1321 aaagtggatg aaagggaaaa gcaggcagca ttagaggaag aacaggctcg attaaaagca
     1381 ctaaaggaac agcgtctaaa agaacttgca aagaaaccgc atacctcttt aacaactgca
     1441 gcctctcctg tgtccacctc agcaggggga ataatgactg caccagccat cgacatattt
     1501 tctaccccta gttcttctaa cagcacatcc aagctgccaa atgacctgct tgatttgcag
     1561 cagccaacct ttcatccatc tgtccatgct atgtcagctg ctcctcaggt agcaagtaca
     1621 tggggagatg ctgttgatga tgccattcca agcttaaatc ctttcctcac aaaaagtagt
     1681 ggtgatgttc accttcctat ttcttcagat gtatccactt ttactactag gacacctact
     1741 catgaaatgt ttgttggatt cagtccttct ccggttacac agccacatcc ttcagctggc
     1801 cttaatgttg actttgaatc tgtgtttgga aataagtcta cgaatgttgc tgtagattct
     1861 ggtggctttg atgaactagg tggacttctc aaaccaacag tggcctctca gaaccagagt
     1921 cttcctgttg ccaaacttgc gcctaacaaa ttagtgtctg atgacttgga ttcatcttta
     1981 gccaaccttg tgggcaatct tggcattgga aatggaacca ctaagaatga tgtaagttgg
     2041 agtcaaccag gtgaaaagaa gttaactgga ggatctaact ggcaaccaaa ggttgcacca
     2101 acaactgcct ggagtgctgc aacaatggca ccccctgtaa tggcctatcc tgctactaca
     2161 ccaacgggca tgataggata tggaattcct cctcagatgg gaagtgtacc tgtaatgaca
     2221 cagccaacct taatatacag ccagcctgtc atgagaccgc caaacccctt tggccctgta
     2281 ccaggagcac agctgtcggc agcatccagc ccctcaaggc acagtcctca cagagctgca
     2341 ggaaaggacc cctttgcaga gctctctctg gaggacttct tataagtcac ttagatacag
     2401 tttatgtaac tagatggaag agaatggaat tactccaaga atagaagtgc acaggtggcg
     2461 actccttact tccagcaaaa tccaaactgc tgtctctgag actcttcctc cattagagct
     2521 ctccagtaac ccatgatggc ccacgacggg atgggactag tttataggag agcgttgtca
     2581 ataccattta taaagccaag aattgccatg atttaagact aagatctgtc tttttggtga
     2641 ctaacacttc aattctttca actcctatta atacccataa tcagtaacct accaagaaaa
     2701 gcccgtattt ggaaagtgtg gagtttgtgt tggaaaagct gcctggagag aagagttgtg
     2761 tcctttacca tattcaacag gactcattgg gggatcaaaa tcataatttt aaattatgca
     2821 ttatatttct tttctccact cctcacaaat acagaaacca taattaaagt taacttttct
     2881 ttttaaaaaa attatattca gtttgcagta gacattcctt aagtatttgt atttatttat
     2941 gattatcaat tttacataac attaatatta tatcaaacct ccttaagaaa atgagtatgg
     3001 atgttcacag tatgtttgat ttttatctac aagaatgaat ctgattcaga atgcttttca
     3061 gctgacatac agagcactaa atactttaag gcaaaaccat aggtctgaat ctcttaagaa
     3121 ttctcagtct ctatgggatg tagggacgca ttataaatgc attaatcctt atagtcaatc
     3181 ctgtgcctag gattttgcaa gggaacagtt cactgactag gaaaagcact acatttaaat
     3241 tcagcattag tgcactggga aggatcgttt ctgctttgtg cttggcatgt cattatttcc
     3301 cacttgacat tagggccttt ccagatgaat gtgaggaatt gctttcactt caagactttc
     3361 cttcttttca gtaaaacttt aggagatgta atggggaaaa gggaggggga cagaaatcct
     3421 tgaacttttt atttggcgtg tgccatgtta tgatcatgta ccttttaaat aaggggagat
     3481 agtatcttta aagtcagtgt ctagccaaga gcttagctaa tgaagaatta cactgcactg
     3541 ttgaccggtg cattctgtac atacatctta acgcctgggg tgagaggggc cttaagaagg
     3601 acaggtcatt gtaggaaagc aattctgtac atgagttaag catacttgtt gcattgtctc
     3661 tgcagattct atttttgttt acaatattaa aatgtatgtt agcaaatggg tggattttca
     3721 aataaaatgc agcttccaca aaacatgtta tggtattctg gtttgaggtg cattctcctt
     3781 tttcctttca tttttttttt tttttattac cagtatcatc agttctttgc taataaaatt
     3841 atgcccagga agttatatct gctggtcaaa taaaatgtaa aatttgtttt atttaaacat
     3901 acaaaaagaa taatgtttga attcttgtta ccatctggac tcacttagaa acattatact
     3961 tgttcacttt cctttctgat tggatgcctt cagtcaggta agttaagaga aaagtactct
     4021 tcggtgcata agattgtgtt tgctaaagaa tatttgtatc atgtagcata gtgaataata
     4081 accagcatca gtgcatcaga gagagattaa aagctgtaaa ctgctaagtg tttgttatgg
     4141 tgtggaaaaa tcatacagtc tttagccaat gtgtttttgt taatgactga ttttcaaatt
     4201 tcgctattat taaaatgttt ccatataaac tga
//
