LOCUS       XM_006229671            4258 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X3, mRNA.
ACCESSION   XM_006229671
VERSION     XM_006229671.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229671.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229671.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4258
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4258
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 63 ESTs, 8 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 135
                     samples with support for all annotated introns"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
     CDS             371..2410
                     /gene="Picalm"
                     /gene_synonym="Calm"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X3"
                     /protein_id="XP_006229733.1"
                     /db_xref="GeneID:89816"
                     /db_xref="RGD:621054"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQVASTWGDAVDDAIPSLNPFLTKSSGDVHLPISSDVST
                     FTTRTPTHEMFVGFSPSPVTQPHPSAGLNVDFESVFGNKSTNVAVDSGGFDELGGLLK
                     PTVASQNQSLPVAKLAPNKLVSDDLDSSLANLVGNLGIGNGTTKNDVSWSQPGEKKLT
                     GGSNWQPKVAPTTAWSAATMNGMHFPQYAPPVMAYPATTPTGMIGYGIPPQMGSVPVM
                     TQPTLIYSQPVMRPPNPFGPVPGAQLSAASSPSRHSPHRAAGKDPFAELSLEDFL"
ORIGIN      
        1 cggaacccga gtcacgtgac acaggggcag cccggaaagc tccgaggagg agcctggcgc
       61 cgccattttc ctgcagctgc ctgtccctct tacccggtcg ggctccagct gaccagggaa
      121 ggggtgggct gaggttgagg cgcggggccc gggagtgccc cgacttggtg tgggagcccg
      181 tggggaacac gcgagccggg gctctccgag cgggtggcgg cgcgcggccc tgagccccgc
      241 cccaggccgg caggcgggcc cggagccggt gggggtaggg ggtgcggtgg ggggtgggga
      301 ccctcgggcg cttgggggtc ccaggcccct ccggctgcgg agcggaaggg gtggcggacg
      361 agctgcagag atgtctggcc agagcctgac ggaccgaatc accgcggccc agcacagtgt
      421 cactggctcc gcggtatcta agacagtatg caaggccacg acccacgaga tcatgggccc
      481 caagaaaaag cacctggact acttaattca gtgtacaaat gagatgaatg tgaatatccc
      541 acagttggca gacagtttgt ttgaaagaac tactaatagt agttgggtgg tggtcttcaa
      601 atcactcatt acaactcatc atttgatggt gtatggaaat gagcgtttca ttcagtattt
      661 ggcttcaaga aacacattgt ttaacttaag caactttttg gataaaagtg gattgcaagg
      721 atatgatatg tctacattta ttagacgata tagtaggtac ctaaatgaaa aggcagtttc
      781 atacagacaa gttgcattcg atttcacaaa agtgaagaga ggagctgatg gagttatgag
      841 aacaatgaac acagaaaaac tgttaaaaac tgtaccaatt atccaaaatc aaatggatgc
      901 acttcttgat tttaatgtta atagtaatga acttacaaat ggggtaataa atgctgcctt
      961 catgctcctg ttcaaagatg ccattagact atttgcagca tacaatgaag gaattattaa
     1021 tttattggaa aaatattttg atatgaaaaa gaaccagtgc aaagaaggtc ttgacatcta
     1081 taagaagttt ttgactagga tgacaagaat ctcagagttt ctgaaagttg cagagcaagt
     1141 tggaattgac agaggagata ttccagatct ttcacaggcc cccagcagtc ttcttgatgc
     1201 tttagaacaa catttagctt ccttggaagg gaagaaaatc aaagattcca cagctgcaag
     1261 cagggctaca acactttcca atgcagtctc ttctttggca agcactggcc tatctctgac
     1321 caaagtggat gaaagggaaa agcaggcagc attagaggaa gaacaggctc gattaaaagc
     1381 actaaaggaa cagcgtctaa aagaacttgc aaagaaaccg catacctctt taacaactgc
     1441 agcctctcct gtgtccacct cagcaggggg aataatgact gcaccagcca tcgacatatt
     1501 ttctacccct agttcttcta acagcacatc caagctgcca aatgacctgc ttgatttgca
     1561 gcagccaacc tttcatccat ctgtccatgc tatgtcagct gctcctcagg tagcaagtac
     1621 atggggagat gctgttgatg atgccattcc aagcttaaat cctttcctca caaaaagtag
     1681 tggtgatgtt caccttccta tttcttcaga tgtatccact tttactacta ggacacctac
     1741 tcatgaaatg tttgttggat tcagtccttc tccggttaca cagccacatc cttcagctgg
     1801 ccttaatgtt gactttgaat ctgtgtttgg aaataagtct acgaatgttg ctgtagattc
     1861 tggtggcttt gatgaactag gtggacttct caaaccaaca gtggcctctc agaaccagag
     1921 tcttcctgtt gccaaacttg cgcctaacaa attagtgtct gatgacttgg attcatcttt
     1981 agccaacctt gtgggcaatc ttggcattgg aaatggaacc actaagaatg atgtaagttg
     2041 gagtcaacca ggtgaaaaga agttaactgg aggatctaac tggcaaccaa aggttgcacc
     2101 aacaactgcc tggagtgctg caacaatgaa tggcatgcat tttccacaat acgcaccccc
     2161 tgtaatggcc tatcctgcta ctacaccaac gggcatgata ggatatggaa ttcctcctca
     2221 gatgggaagt gtacctgtaa tgacacagcc aaccttaata tacagccagc ctgtcatgag
     2281 accgccaaac ccctttggcc ctgtaccagg agcacagctg tcggcagcat ccagcccctc
     2341 aaggcacagt cctcacagag ctgcaggaaa ggaccccttt gcagagctct ctctggagga
     2401 cttcttataa gtcacttaga tacagtttat gtaactagat ggaagagaat ggaattactc
     2461 caagaataga agtgcacagg tggcgactcc ttacttccag caaaatccaa actgctgtct
     2521 ctgagactct tcctccatta gagctctcca gtaacccatg atggcccacg acgggatggg
     2581 actagtttat aggagagcgt tgtcaatacc atttataaag ccaagaattg ccatgattta
     2641 agactaagat ctgtcttttt ggtgactaac acttcaattc tttcaactcc tattaatacc
     2701 cataatcagt aacctaccaa gaaaagcccg tatttggaaa gtgtggagtt tgtgttggaa
     2761 aagctgcctg gagagaagag ttgtgtcctt taccatattc aacaggactc attgggggat
     2821 caaaatcata attttaaatt atgcattata tttcttttct ccactcctca caaatacaga
     2881 aaccataatt aaagttaact tttcttttta aaaaaattat attcagtttg cagtagacat
     2941 tccttaagta tttgtattta tttatgatta tcaattttac ataacattaa tattatatca
     3001 aacctcctta agaaaatgag tatggatgtt cacagtatgt ttgattttta tctacaagaa
     3061 tgaatctgat tcagaatgct tttcagctga catacagagc actaaatact ttaaggcaaa
     3121 accataggtc tgaatctctt aagaattctc agtctctatg ggatgtaggg acgcattata
     3181 aatgcattaa tccttatagt caatcctgtg cctaggattt tgcaagggaa cagttcactg
     3241 actaggaaaa gcactacatt taaattcagc attagtgcac tgggaaggat cgtttctgct
     3301 ttgtgcttgg catgtcatta tttcccactt gacattaggg cctttccaga tgaatgtgag
     3361 gaattgcttt cacttcaaga ctttccttct tttcagtaaa actttaggag atgtaatggg
     3421 gaaaagggag ggggacagaa atccttgaac tttttatttg gcgtgtgcca tgttatgatc
     3481 atgtaccttt taaataaggg gagatagtat ctttaaagtc agtgtctagc caagagctta
     3541 gctaatgaag aattacactg cactgttgac cggtgcattc tgtacataca tcttaacgcc
     3601 tggggtgaga ggggccttaa gaaggacagg tcattgtagg aaagcaattc tgtacatgag
     3661 ttaagcatac ttgttgcatt gtctctgcag attctatttt tgtttacaat attaaaatgt
     3721 atgttagcaa atgggtggat tttcaaataa aatgcagctt ccacaaaaca tgttatggta
     3781 ttctggtttg aggtgcattc tcctttttcc tttcattttt tttttttttt attaccagta
     3841 tcatcagttc tttgctaata aaattatgcc caggaagtta tatctgctgg tcaaataaaa
     3901 tgtaaaattt gttttattta aacatacaaa aagaataatg tttgaattct tgttaccatc
     3961 tggactcact tagaaacatt atacttgttc actttccttt ctgattggat gccttcagtc
     4021 aggtaagtta agagaaaagt actcttcggt gcataagatt gtgtttgcta aagaatattt
     4081 gtatcatgta gcatagtgaa taataaccag catcagtgca tcagagagag attaaaagct
     4141 gtaaactgct aagtgtttgt tatggtgtgg aaaaatcata cagtctttag ccaatgtgtt
     4201 tttgttaatg actgattttc aaatttcgct attattaaaa tgtttccata taaactga
//
